CRISPRone

CRISPRone report for GCA_003863035.1_ASM386303v1

♦ Seq 1: RQZR01000023.1 Clostridioides difficile strain 17-067-13322 MRSN469142_contig00023, whole genome shotgun sequence

⇒Summary: seq-len = 148935 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23100-25610 bp 2 Locus 2: 117994-118287 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23100-23389 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23100-23389 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25254-25610 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25254-25610 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 117994-118287 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 117994-118287 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23100-23389 bp]: array | spacers
           [Locus range 25254-25610 bp]: array | spacers
           [Locus range 117994-118287 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RQZR01000009.1 Clostridioides difficile strain 17-067-13322 MRSN469142_contig00009, whole genome shotgun sequence

⇒Summary: seq-len = 236571 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45250-53125 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45250-47658 bp Gene: cd09693:cas5 Type: Type-I Location: 47685-48491 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48507-49520 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49540-51015 bp Gene: pfam01881:cas6 Type: other Location: 51020-51757 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 52016-53125 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RQZR01000007.1 Clostridioides difficile strain 17-067-13322 MRSN469142_contig00007, whole genome shotgun sequence

⇒Summary: seq-len = 353825 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12177-12271 bp 2 Locus 2: 53892-54517 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 12177-12271 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 12177-12271 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 53892-54517 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 53892-54517 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12177-12271 bp]: array | spacers
           [Locus range 53892-54517 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RQZR01000002.1 Clostridioides difficile strain 17-067-13322 MRSN469142_contig00002, whole genome shotgun sequence

⇒Summary: seq-len = 174928 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 58072-64604 bp Zoom in on locus 1 x10 CRISPR array Location: 58072-58694 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 58072-58694 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 58947-60932 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 60943-62013 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 62034-63200 bp Gene: pfam01881:cas6 Type: other Location: 63202-63966 bp Gene: cd09693:cas5 Type: Type-I Location: 63957-64604 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 58072-58694 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RQZR01000005.1 Clostridioides difficile strain 17-067-13322 MRSN469142_contig00005, whole genome shotgun sequence

⇒Summary: seq-len = 258455 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 196001-197085 bp Zoom in on locus 1 x17 CRISPR array Location: 196001-197085 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 196001-197085 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 196001-197085 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RQZR01000010.1 Clostridioides difficile strain 17-067-13322 MRSN469142_contig00010, whole genome shotgun sequence

⇒Summary: seq-len = 289198 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 858-1879 bp 2 Locus 2: 210267-210954 bp Zoom in on locus 1 x16 Zoom in on locus 2 x11 CRISPR array Location: 858-1879 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 858-1879 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 210267-210954 bp Num of repeats: 11 Spacers: s16-s25 CRISPR array Location: 210267-210954 bp Num of repeats: 11 Spacers: s16-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 858-1879 bp]: array | spacers
           [Locus range 210267-210954 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: RQZR01000021.1 Clostridioides difficile strain 17-067-13322 MRSN469142_contig00021, whole genome shotgun sequence

⇒Summary: seq-len = 168936 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16363-26631 bp Zoom in on locus 1 x24 Gene: pfam13280:WYL Type: other Location: 16363-17277 bp Gene: pfam01881:cas6 Type: other Location: 17355-18092 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18098-19975 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 19977-20891 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 20893-21594 bp Gene: COG1203:cas3 Type: Type-I Location: 21605-23926 bp Gene: pfam01930:cas4 Type: Type-I Location: 23923-24492 bp Gene: cd09722:cas1 Type: universal Location: 24495-25475 bp Gene: cd09725:cas2 Type: universal Location: 25478-25744 bp CRISPR array Location: 25928-27478 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 25928-27478 bp Num of repeats: 24 Spacers: s1-s23 Gene: unk Type: unknown Location: 26009-26176 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26398-26631 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25928-27478 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)