CRISPRone

CRISPRone report for GCA_003863045.1_ASM386304v1

♦ Seq 1: RQZQ01000012.1 Clostridioides difficile strain 17-051-10330 MRSN469133_contig00012, whole genome shotgun sequence

⇒Summary: seq-len = 490413 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91481-91775 bp 2 Locus 2: 299890-300248 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 CRISPR array Location: 91481-91775 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 91481-91775 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 299890-300248 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 299890-300248 bp Num of repeats: 6 Spacers: s5-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91481-91775 bp]: array | spacers
           [Locus range 299890-300248 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RQZQ01000002.1 Clostridioides difficile strain 17-051-10330 MRSN469133_contig00002, whole genome shotgun sequence

⇒Summary: seq-len = 754157 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 344401-345808 bp 2 Locus 2: 396720-396880 bp 3 Locus 3: 714749-715900 bp Zoom in on locus 1 x22 Zoom in on locus 2 x3 Zoom in on locus 3 x18 CRISPR array Location: 344401-345808 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 344401-345808 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 396720-396880 bp Num of repeats: 3 Spacers: s22-s23 CRISPR array Location: 396720-396880 bp Num of repeats: 3 Spacers: s22-s23 CRISPR array Location: 714749-715900 bp Num of repeats: 18 Spacers: s24-s40 CRISPR array Location: 714749-715900 bp Num of repeats: 18 Spacers: s24-s40 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 344401-345808 bp]: array | spacers
           [Locus range 396720-396880 bp]: array | spacers
           [Locus range 714749-715900 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RQZQ01000011.1 Clostridioides difficile strain 17-051-10330 MRSN469133_contig00011, whole genome shotgun sequence

⇒Summary: seq-len = 132147 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112633-113722 bp Zoom in on locus 1 x17 CRISPR array Location: 112633-113722 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 112633-113722 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112633-113722 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RQZQ01000001.1 Clostridioides difficile strain 17-051-10330 MRSN469133_contig00001, whole genome shotgun sequence

⇒Summary: seq-len = 493981 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244560-245118 bp 2 Locus 2: 318385-326250 bp 3 Locus 3: 488228-489243 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x16 CRISPR array Location: 244560-245118 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244560-245118 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318385-319494 bp Gene: pfam01881:cas6 Type: other Location: 319752-320489 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320494-321969 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 321989-323002 bp Gene: cd09693:cas5 Type: Type-I Location: 323018-323815 bp Gene: cd09641:cas3HD Type: Type-I Location: 323842-326250 bp CRISPR array Location: 488228-489243 bp Num of repeats: 16 Spacers: s9-s23 CRISPR array Location: 488228-489243 bp Num of repeats: 16 Spacers: s9-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244560-245118 bp]: array | spacers
           [Locus range 488228-489243 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RQZQ01000005.1 Clostridioides difficile strain 17-051-10330 MRSN469133_contig00005, whole genome shotgun sequence

⇒Summary: seq-len = 349904 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87641-98941 bp Zoom in on locus 1 x27 CRISPR array Location: 87641-89376 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 87641-89376 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 89560-89826 bp Gene: cd09722:cas1 Type: universal Location: 89829-90809 bp Gene: pfam01930:cas4 Type: Type-I Location: 90812-91330 bp Gene: COG1203:cas3 Type: Type-I Location: 91378-93699 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 93710-94411 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 94413-95327 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 95329-97206 bp Gene: pfam01881:cas6 Type: other Location: 97212-98006 bp Gene: pfam13280:WYL Type: other Location: 98027-98941 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 87641-89376 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)