CRISPRone

CRISPRone report for GCA_003863075.1_ASM386307v1

♦ Seq 1: RQZO01000027.1 Clostridioides difficile strain 16-349-01063 MRSN439743_contig00027, whole genome shotgun sequence

⇒Summary: seq-len = 140789 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113329-124444 bp Zoom in on locus 1 x24 CRISPR array Location: 113329-114879 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 113329-114879 bp Num of repeats: 24 Spacers: s1-s23 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114175-114408 bp Gene: unk Type: unknown Location: 114630-114797 bp Gene: cd09725:cas2 Type: universal Location: 115063-115329 bp Gene: cd09722:cas1 Type: universal Location: 115332-116312 bp Gene: pfam01930:cas4 Type: Type-I Location: 116315-116833 bp Gene: COG1203:cas3 Type: Type-I Location: 116881-119202 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119213-119914 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 119916-120830 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 120832-122709 bp Gene: pfam01881:cas6 Type: other Location: 122715-123509 bp Gene: pfam13280:WYL Type: other Location: 123530-124444 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113329-114879 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RQZO01000026.1 Clostridioides difficile strain 16-349-01063 MRSN439743_contig00026, whole genome shotgun sequence

⇒Summary: seq-len = 148906 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23100-25610 bp 2 Locus 2: 117994-118287 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23100-23389 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23100-23389 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25254-25610 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25254-25610 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 117994-118287 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 117994-118287 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23100-23389 bp]: array | spacers
           [Locus range 25254-25610 bp]: array | spacers
           [Locus range 117994-118287 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RQZO01000004.1 Clostridioides difficile strain 16-349-01063 MRSN439743_contig00004, whole genome shotgun sequence

⇒Summary: seq-len = 90799 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63503-70035 bp Zoom in on locus 1 x10 CRISPR array Location: 63503-64125 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 63503-64125 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 64378-66363 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 66374-67444 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 67465-68631 bp Gene: pfam01881:cas6 Type: other Location: 68633-69397 bp Gene: cd09693:cas5 Type: Type-I Location: 69388-70035 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63503-64125 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RQZO01000009.1 Clostridioides difficile strain 16-349-01063 MRSN439743_contig00009, whole genome shotgun sequence

⇒Summary: seq-len = 289145 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 858-1812 bp 2 Locus 2: 210200-210887 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 CRISPR array Location: 858-1812 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 858-1812 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 210200-210887 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 210200-210887 bp Num of repeats: 11 Spacers: s15-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 858-1812 bp]: array | spacers
           [Locus range 210200-210887 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RQZO01000002.1 Clostridioides difficile strain 16-349-01063 MRSN439743_contig00002, whole genome shotgun sequence

⇒Summary: seq-len = 258351 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 195963-196981 bp Zoom in on locus 1 x16 CRISPR array Location: 195963-196981 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 195963-196981 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 195963-196981 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RQZO01000008.1 Clostridioides difficile strain 16-349-01063 MRSN439743_contig00008, whole genome shotgun sequence

⇒Summary: seq-len = 353478 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 299309-299935 bp 2 Locus 2: 341555-341650 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 299309-299935 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 299309-299935 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 341555-341650 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 341555-341650 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 299309-299935 bp]: array | spacers
           [Locus range 341555-341650 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: RQZO01000010.1 Clostridioides difficile strain 16-349-01063 MRSN439743_contig00010, whole genome shotgun sequence

⇒Summary: seq-len = 236486 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45250-53125 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45250-47658 bp Gene: cd09693:cas5 Type: Type-I Location: 47685-48491 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48507-49520 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49540-51015 bp Gene: pfam01881:cas6 Type: other Location: 51020-51757 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 52016-53125 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)