CRISPRone

CRISPRone report for GCA_003863105.1_ASM386310v1

♦ Seq 1: RQZJ01000041.1 Clostridioides difficile strain 16-337-06669 MRSN439619_contig00041, whole genome shotgun sequence

⇒Summary: seq-len = 83970 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80588-81204 bp Zoom in on locus 1 x10 CRISPR array Location: 80588-81204 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 80588-81204 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 80588-81204 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RQZJ01000002.1 Clostridioides difficile strain 16-337-06669 MRSN439619_contig00002, whole genome shotgun sequence

⇒Summary: seq-len = 51442 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12608-12701 bp Zoom in on locus 1 x2 CRISPR array Location: 12608-12701 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 12608-12701 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12608-12701 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RQZJ01000044.1 Clostridioides difficile strain 16-337-06669 MRSN439619_contig00044, whole genome shotgun sequence

⇒Summary: seq-len = 68092 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63564-64713 bp Zoom in on locus 1 x18 CRISPR array Location: 63564-64713 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63564-64713 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63564-64713 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RQZJ01000055.1 Clostridioides difficile strain 16-337-06669 MRSN439619_contig00055, whole genome shotgun sequence

⇒Summary: seq-len = 7696 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2597-7527 bp Zoom in on locus 1 x14 x4 x7 CRISPR array Location: 2597-3482 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 2597-3482 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 5276-5499 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 5276-5499 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 7104-7527 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 7104-7527 bp Num of repeats: 7 Spacers: s17-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2597-3482 bp]: array | spacers
           [Locus range 5276-5499 bp]: array | spacers
           [Locus range 7104-7527 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RQZJ01000038.1 Clostridioides difficile strain 16-337-06669 MRSN439619_contig00038, whole genome shotgun sequence

⇒Summary: seq-len = 96292 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77903-78659 bp Zoom in on locus 1 x12 CRISPR array Location: 77903-78659 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 77903-78659 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 77903-78659 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RQZJ01000016.1 Clostridioides difficile strain 16-337-06669 MRSN439619_contig00016, whole genome shotgun sequence

⇒Summary: seq-len = 286019 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44142-44500 bp 2 Locus 2: 117782-126103 bp Zoom in on locus 1 x6 Zoom in on locus 2 CRISPR array Location: 44142-44500 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44142-44500 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 117782-118891 bp Gene: unk Type: unknown Location: 119325-119501 bp Gene: pfam01881:cas6 Type: other Location: 119602-120339 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120344-121819 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 121839-122855 bp Gene: cd09693:cas5 Type: Type-I Location: 122871-123668 bp Gene: cd09641:cas3HD Type: Type-I Location: 123695-126103 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44142-44500 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: RQZJ01000026.1 Clostridioides difficile strain 16-337-06669 MRSN439619_contig00026, whole genome shotgun sequence

⇒Summary: seq-len = 215605 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90804-91362 bp Zoom in on locus 1 x9 CRISPR array Location: 90804-91362 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 90804-91362 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90804-91362 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: RQZJ01000054.1 Clostridioides difficile strain 16-337-06669 MRSN439619_contig00054, whole genome shotgun sequence

⇒Summary: seq-len = 7948 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3488-7778 bp Zoom in on locus 1 x4 x4 x5 CRISPR array Location: 3488-3715 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3488-3715 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 5578-5803 bp Num of repeats: 4 Spacers: s4-s6 CRISPR array Location: 5578-5803 bp Num of repeats: 4 Spacers: s4-s6 CRISPR array Location: 7487-7778 bp Num of repeats: 5 Spacers: s7-s10 CRISPR array Location: 7487-7778 bp Num of repeats: 5 Spacers: s7-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3488-3715 bp]: array | spacers
           [Locus range 5578-5803 bp]: array | spacers
           [Locus range 7487-7778 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: RQZJ01000001.1 Clostridioides difficile strain 16-337-06669 MRSN439619_contig00001, whole genome shotgun sequence

⇒Summary: seq-len = 472522 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252652-263136 bp Zoom in on locus 1 x15 CRISPR array Location: 252652-253598 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 252652-253598 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09725:cas2 Type: universal Location: 253782-254048 bp Gene: cd09722:cas1 Type: universal Location: 254051-255031 bp Gene: pfam01930:cas4 Type: Type-I Location: 255034-255552 bp Gene: COG1203:cas3 Type: Type-I Location: 255600-257921 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 257932-258633 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258635-259549 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259551-261401 bp Gene: pfam01881:cas6 Type: other Location: 261407-262201 bp Gene: pfam13280:WYL Type: other Location: 262222-263136 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252652-253598 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: RQZJ01000014.1 Clostridioides difficile strain 16-337-06669 MRSN439619_contig00014, whole genome shotgun sequence

⇒Summary: seq-len = 202058 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110170-110330 bp Zoom in on locus 1 x3 CRISPR array Location: 110170-110330 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 110170-110330 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110170-110330 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)