CRISPRone

CRISPRone report for GCA_003863135.1_ASM386313v1

♦ Seq 1: RRAR01000007.1 Clostridioides difficile strain 17-265-08880 MRSN537878_contig00007, whole genome shotgun sequence

⇒Summary: seq-len = 586586 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 292037-292792 bp 2 Locus 2: 458313-466650 bp 3 Locus 3: 539875-540831 bp Zoom in on locus 1 x12 Zoom in on locus 2 Zoom in on locus 3 x15 CRISPR array Location: 292037-292792 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 292037-292792 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 458313-460721 bp Gene: cd09693:cas5 Type: Type-I Location: 460748-461554 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 461570-462583 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 462602-464068 bp Gene: pfam01881:cas6 Type: other Location: 464073-464810 bp Gene: unk Type: unknown Location: 464911-465087 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 465541-466650 bp CRISPR array Location: 539875-540831 bp Num of repeats: 15 Spacers: s12-s25 CRISPR array Location: 539875-540831 bp Num of repeats: 15 Spacers: s12-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 292037-292792 bp]: array | spacers
           [Locus range 539875-540831 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRAR01000006.1 Clostridioides difficile strain 17-265-08880 MRSN537878_contig00006, whole genome shotgun sequence

⇒Summary: seq-len = 194583 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107283-107444 bp Zoom in on locus 1 x3 CRISPR array Location: 107283-107444 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 107283-107444 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 107283-107444 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RRAR01000008.1 Clostridioides difficile strain 17-265-08880 MRSN537878_contig00008, whole genome shotgun sequence

⇒Summary: seq-len = 260795 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 163266-174517 bp Zoom in on locus 1 x27 Gene: pfam13280:WYL Type: other Location: 163266-164153 bp Gene: pfam01881:cas6 Type: other Location: 164231-164968 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 164974-166824 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 166826-167740 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 167742-168443 bp Gene: COG1203:cas3 Type: Type-I Location: 168454-170775 bp Gene: pfam01930:cas4 Type: Type-I Location: 170790-171341 bp Gene: cd09722:cas1 Type: universal Location: 171344-172324 bp Gene: cd09725:cas2 Type: universal Location: 172327-172593 bp CRISPR array Location: 172777-174517 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 172777-174517 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 172777-174517 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RRAR01000028.1 Clostridioides difficile strain 17-265-08880 MRSN537878_contig00028, whole genome shotgun sequence

⇒Summary: seq-len = 181150 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124578-125792 bp Zoom in on locus 1 x19 CRISPR array Location: 124578-125792 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 124578-125792 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124578-125792 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RRAR01000003.1 Clostridioides difficile strain 17-265-08880 MRSN537878_contig00003, whole genome shotgun sequence

⇒Summary: seq-len = 70787 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60651-61539 bp Zoom in on locus 1 x14 CRISPR array Location: 60651-61539 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 60651-61539 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60651-61539 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RRAR01000001.1 Clostridioides difficile strain 17-265-08880 MRSN537878_contig00001, whole genome shotgun sequence

⇒Summary: seq-len = 122659 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17016-17510 bp 2 Locus 2: 108163-109617 bp Zoom in on locus 1 x8 Zoom in on locus 2 x7 x7 CRISPR array Location: 17016-17510 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 17016-17510 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 108163-108590 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 108163-108590 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 109193-109617 bp Num of repeats: 7 Spacers: s14-s19 CRISPR array Location: 109193-109617 bp Num of repeats: 7 Spacers: s14-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17016-17510 bp]: array | spacers
           [Locus range 108163-108590 bp]: array | spacers
           [Locus range 109193-109617 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)