CRISPRone

CRISPRone report for GCA_003863145.1_ASM386314v1

♦ Seq 1: RRAV01000005.1 Clostridioides difficile strain 17-313-12749 MRSN537957_contig00005, whole genome shotgun sequence

⇒Summary: seq-len = 258260 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 196001-196889 bp Zoom in on locus 1 x14 CRISPR array Location: 196001-196889 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 196001-196889 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 196001-196889 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRAV01000010.1 Clostridioides difficile strain 17-313-12749 MRSN537957_contig00010, whole genome shotgun sequence

⇒Summary: seq-len = 85522 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20825-27358 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 20825-21472 bp Gene: pfam01881:cas6 Type: other Location: 21463-22227 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 22229-23395 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 23416-24486 bp Gene: COG1203:cas3 Type: Type-I Location: 24497-26482 bp CRISPR array Location: 26735-27358 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 26735-27358 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26735-27358 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RRAV01000013.1 Clostridioides difficile strain 17-313-12749 MRSN537957_contig00013, whole genome shotgun sequence

⇒Summary: seq-len = 236963 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45250-53125 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45250-47658 bp Gene: cd09693:cas5 Type: Type-I Location: 47685-48491 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48507-49520 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49540-51015 bp Gene: pfam01881:cas6 Type: other Location: 51020-51757 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 52016-53125 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RRAV01000020.1 Clostridioides difficile strain 17-313-12749 MRSN537957_contig00020, whole genome shotgun sequence

⇒Summary: seq-len = 141444 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113448-124630 bp Zoom in on locus 1 x25 CRISPR array Location: 113448-115065 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 113448-115065 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114294-114527 bp Gene: unk Type: unknown Location: 114749-114916 bp Gene: cd09725:cas2 Type: universal Location: 115249-115515 bp Gene: cd09722:cas1 Type: universal Location: 115518-116498 bp Gene: pfam01930:cas4 Type: Type-I Location: 116501-117019 bp Gene: COG1203:cas3 Type: Type-I Location: 117067-119388 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119399-120100 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120102-121016 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 121018-122895 bp Gene: pfam01881:cas6 Type: other Location: 122901-123695 bp Gene: pfam13280:WYL Type: other Location: 123716-124630 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113448-115065 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RRAV01000033.1 Clostridioides difficile strain 17-313-12749 MRSN537957_contig00033, whole genome shotgun sequence

⇒Summary: seq-len = 148897 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23105-25615 bp 2 Locus 2: 117998-118291 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23105-23394 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23105-23394 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25259-25615 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25259-25615 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 117998-118291 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 117998-118291 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23105-23394 bp]: array | spacers
           [Locus range 25259-25615 bp]: array | spacers
           [Locus range 117998-118291 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RRAV01000015.1 Clostridioides difficile strain 17-313-12749 MRSN537957_contig00015, whole genome shotgun sequence

⇒Summary: seq-len = 278420 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 199400-200087 bp Zoom in on locus 1 x11 CRISPR array Location: 199400-200087 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 199400-200087 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 199400-200087 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: RRAV01000001.1 Clostridioides difficile strain 17-313-12749 MRSN537957_contig00001, whole genome shotgun sequence

⇒Summary: seq-len = 354693 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 299311-299937 bp 2 Locus 2: 341557-341652 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 299311-299937 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 299311-299937 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 341557-341652 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 341557-341652 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 299311-299937 bp]: array | spacers
           [Locus range 341557-341652 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: RRAV01000014.1 Clostridioides difficile strain 17-313-12749 MRSN537957_contig00014, whole genome shotgun sequence

⇒Summary: seq-len = 10804 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 858-1816 bp Zoom in on locus 1 x15 CRISPR array Location: 858-1816 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 858-1816 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 858-1816 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)