CRISPRone

CRISPRone report for GCA_003863195.1_ASM386319v1

♦ Seq 1: RRAK01000139.1 Clostridioides difficile strain 17-260-05232 MRSN510127_contig00139, whole genome shotgun sequence

⇒Summary: seq-len = 28182 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 388-482 bp Zoom in on locus 1 x2 CRISPR array Location: 388-482 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 388-482 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 388-482 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRAK01000099.1 Clostridioides difficile strain 17-260-05232 MRSN510127_contig00099, whole genome shotgun sequence

⇒Summary: seq-len = 31915 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23-2533 bp Zoom in on locus 1 x5 x6 CRISPR array Location: 23-312 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23-312 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 2177-2533 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 2177-2533 bp Num of repeats: 6 Spacers: s5-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23-312 bp]: array | spacers
           [Locus range 2177-2533 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RRAK01000141.1 Clostridioides difficile strain 17-260-05232 MRSN510127_contig00141, whole genome shotgun sequence

⇒Summary: seq-len = 6954 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2472-3097 bp Zoom in on locus 1 x10 CRISPR array Location: 2472-3097 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2472-3097 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2472-3097 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RRAK01000067.1 Clostridioides difficile strain 17-260-05232 MRSN510127_contig00067, whole genome shotgun sequence

⇒Summary: seq-len = 8139 bp; # of CRISPR array = 0; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36-8137 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 36-302 bp Gene: cd09722:cas1 Type: universal Location: 305-1285 bp Gene: pfam01930:cas4 Type: Type-I Location: 1288-1806 bp Gene: COG1203:cas3 Type: Type-I Location: 1854-4175 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 4186-4887 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 4889-5803 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 5805-7682 bp Gene: pfam01881:cas6 Type: other Location: 7688-8137 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RRAK01000164.1 Clostridioides difficile strain 17-260-05232 MRSN510127_contig00164, whole genome shotgun sequence

⇒Summary: seq-len = 42872 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10851-11145 bp Zoom in on locus 1 x5 CRISPR array Location: 10851-11145 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 10851-11145 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10851-11145 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RRAK01000070.1 Clostridioides difficile strain 17-260-05232 MRSN510127_contig00070, whole genome shotgun sequence

⇒Summary: seq-len = 19922 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18958-19514 bp Zoom in on locus 1 x9 CRISPR array Location: 18958-19514 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 18958-19514 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18958-19514 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: RRAK01000004.1 Clostridioides difficile strain 17-260-05232 MRSN510127_contig00004, whole genome shotgun sequence

⇒Summary: seq-len = 18842 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-806 bp Zoom in on locus 1 x13 CRISPR array Location: 0-806 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 0-806 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-806 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: RRAK01000179.1 Clostridioides difficile strain 17-260-05232 MRSN510127_contig00179, whole genome shotgun sequence

⇒Summary: seq-len = 39396 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37726-38679 bp Zoom in on locus 1 x15 CRISPR array Location: 37726-38679 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 37726-38679 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 37726-38679 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: RRAK01000168.1 Clostridioides difficile strain 17-260-05232 MRSN510127_contig00168, whole genome shotgun sequence

⇒Summary: seq-len = 37801 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3885-11760 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 3885-4994 bp Gene: pfam01881:cas6 Type: other Location: 5253-5990 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 5995-7470 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 7490-8503 bp Gene: cd09693:cas5 Type: Type-I Location: 8519-9325 bp Gene: cd09641:cas3HD Type: Type-I Location: 9352-11760 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: RRAK01000066.1 Clostridioides difficile strain 17-260-05232 MRSN510127_contig00066, whole genome shotgun sequence

⇒Summary: seq-len = 48999 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47361-48912 bp Zoom in on locus 1 x24 CRISPR array Location: 47361-48912 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 47361-48912 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47361-48912 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: RRAK01000013.1 Clostridioides difficile strain 17-260-05232 MRSN510127_contig00013, whole genome shotgun sequence

⇒Summary: seq-len = 36728 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5855-12387 bp Zoom in on locus 1 x10 CRISPR array Location: 5855-6477 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 5855-6477 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 6730-8715 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 8726-9796 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 9817-10983 bp Gene: pfam01881:cas6 Type: other Location: 10985-11749 bp Gene: cd09693:cas5 Type: Type-I Location: 11740-12387 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5855-6477 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)