CRISPRone

CRISPRone report for GCA_003863205.1_ASM386320v1

♦ Seq 1: RRAD01000009.1 Clostridioides difficile strain 17-239-06812 MRSN510057_contig00009, whole genome shotgun sequence

⇒Summary: seq-len = 165267 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73397-73687 bp Zoom in on locus 1 x5 CRISPR array Location: 73397-73687 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 73397-73687 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73397-73687 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRAD01000011.1 Clostridioides difficile strain 17-239-06812 MRSN510057_contig00011, whole genome shotgun sequence

⇒Summary: seq-len = 75695 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13576-15044 bp Zoom in on locus 1 x23 CRISPR array Location: 13576-15044 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 13576-15044 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13576-15044 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RRAD01000032.1 Clostridioides difficile strain 17-239-06812 MRSN510057_contig00032, whole genome shotgun sequence

⇒Summary: seq-len = 181525 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 117690-118582 bp Zoom in on locus 1 x14 CRISPR array Location: 117690-118582 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 117690-118582 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 117690-118582 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RRAD01000005.1 Clostridioides difficile strain 17-239-06812 MRSN510057_contig00005, whole genome shotgun sequence

⇒Summary: seq-len = 135198 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 64274-74391 bp Zoom in on locus 1 x9 CRISPR array Location: 64274-64826 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 64274-64826 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 65010-65276 bp Gene: cd09722:cas1 Type: universal Location: 65279-66259 bp Gene: pfam01930:cas4 Type: Type-I Location: 66262-66780 bp Gene: cd09641:cas3HD Type: Type-I Location: 66828-69149 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 69160-69861 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 69863-70777 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 70779-72656 bp Gene: pfam01881:cas6 Type: other Location: 72662-73456 bp Gene: pfam13280:WYL Type: other Location: 73477-74391 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64274-64826 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RRAD01000001.1 Clostridioides difficile strain 17-239-06812 MRSN510057_contig00001, whole genome shotgun sequence

⇒Summary: seq-len = 766585 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 280901-281452 bp 2 Locus 2: 444872-453218 bp 3 Locus 3: 526501-527129 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 280901-281452 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 280901-281452 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09641:cas3HD Type: Type-I Location: 444872-447280 bp Gene: cd09693:cas5 Type: Type-I Location: 447307-448104 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 448120-449136 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 449156-450631 bp Gene: pfam01881:cas6 Type: other Location: 450636-451373 bp Gene: unk Type: unknown Location: 451474-451650 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 452109-453218 bp CRISPR array Location: 526501-527129 bp Num of repeats: 10 Spacers: s9-s17 CRISPR array Location: 526501-527129 bp Num of repeats: 10 Spacers: s9-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 280901-281452 bp]: array | spacers
           [Locus range 526501-527129 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RRAD01000013.1 Clostridioides difficile strain 17-239-06812 MRSN510057_contig00013, whole genome shotgun sequence

⇒Summary: seq-len = 114697 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13676-13965 bp 2 Locus 2: 94577-96582 bp Zoom in on locus 1 x5 Zoom in on locus 2 x31 CRISPR array Location: 13676-13965 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 13676-13965 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 94577-96582 bp Num of repeats: 31 Spacers: s5-s34 CRISPR array Location: 94577-96582 bp Num of repeats: 31 Spacers: s5-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13676-13965 bp]: array | spacers
           [Locus range 94577-96582 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: RRAD01000037.1 Clostridioides difficile strain 17-239-06812 MRSN510057_contig00037, whole genome shotgun sequence

⇒Summary: seq-len = 36463 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17948-20560 bp Zoom in on locus 1 x4 x11 CRISPR array Location: 17948-18170 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 17948-18170 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 19874-20560 bp Num of repeats: 11 Spacers: s4-s13 CRISPR array Location: 19874-20560 bp Num of repeats: 11 Spacers: s4-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17948-18170 bp]: array | spacers
           [Locus range 19874-20560 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)