CRISPRone

CRISPRone report for GCA_003863255.1_ASM386325v1

♦ Seq 1: RQZY01000427.1 Clostridioides difficile strain 17-220-06564 MRSN510002_contig00427, whole genome shotgun sequence

⇒Summary: seq-len = 10361 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5289-6895 bp Zoom in on locus 1 x25 CRISPR array Location: 5289-6895 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 5289-6895 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5289-6895 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RQZY01000079.1 Clostridioides difficile strain 17-220-06564 MRSN510002_contig00079, whole genome shotgun sequence

⇒Summary: seq-len = 2614 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 936-2408 bp Zoom in on locus 1 x23 CRISPR array Location: 936-2408 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 936-2408 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 936-2408 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RQZY01000647.1 Clostridioides difficile strain 17-220-06564 MRSN510002_contig00655, whole genome shotgun sequence

⇒Summary: seq-len = 258 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30-258 bp Zoom in on locus 1 x4 CRISPR array Location: 30-258 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 30-258 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30-258 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RQZY01000518.1 Clostridioides difficile strain 17-220-06564 MRSN510002_contig00518, whole genome shotgun sequence

⇒Summary: seq-len = 1859 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1420-1646 bp Zoom in on locus 1 x4 CRISPR array Location: 1420-1646 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1420-1646 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1420-1646 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RQZY01000006.1 Clostridioides difficile strain 17-220-06564 MRSN510002_contig00006, whole genome shotgun sequence

⇒Summary: seq-len = 29247 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18435-26300 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 18435-20843 bp Gene: cd09693:cas5 Type: Type-I Location: 20870-21667 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 21683-22696 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 22716-24191 bp Gene: pfam01881:cas6 Type: other Location: 24196-24933 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 25191-26300 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RQZY01000516.1 Clostridioides difficile strain 17-220-06564 MRSN510002_contig00516, whole genome shotgun sequence

⇒Summary: seq-len = 6396 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5849-6009 bp Zoom in on locus 1 x3 CRISPR array Location: 5849-6009 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5849-6009 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5849-6009 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: RQZY01000024.1 Clostridioides difficile strain 17-220-06564 MRSN510002_contig00024, whole genome shotgun sequence

⇒Summary: seq-len = 5776 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5283-5508 bp Zoom in on locus 1 x4 CRISPR array Location: 5283-5508 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 5283-5508 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5283-5508 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: RQZY01000278.1 Clostridioides difficile strain 17-220-06564 MRSN510002_contig00278, whole genome shotgun sequence

⇒Summary: seq-len = 20019 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16431-17319 bp Zoom in on locus 1 x14 CRISPR array Location: 16431-17319 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 16431-17319 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16431-17319 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: RQZY01000080.1 Clostridioides difficile strain 17-220-06564 MRSN510002_contig00080, whole genome shotgun sequence

⇒Summary: seq-len = 9598 bp; # of CRISPR array = 0; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16-9370 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 16-282 bp Gene: cd09722:cas1 Type: universal Location: 285-1265 bp Gene: pfam01930:cas4 Type: Type-I Location: 1268-1786 bp Gene: COG1203:cas3 Type: Type-I Location: 1834-4155 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 4166-4867 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 4869-5783 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 5785-7635 bp Gene: pfam01881:cas6 Type: other Location: 7641-8435 bp Gene: pfam13280:WYL Type: other Location: 8456-9370 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: RQZY01000106.1 Clostridioides difficile strain 17-220-06564 MRSN510002_contig00106, whole genome shotgun sequence

⇒Summary: seq-len = 32300 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27259-27354 bp Zoom in on locus 1 x2 CRISPR array Location: 27259-27354 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 27259-27354 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 27259-27354 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: RQZY01000211.1 Clostridioides difficile strain 17-220-06564 MRSN510002_contig00211, whole genome shotgun sequence

⇒Summary: seq-len = 10154 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 471-1419 bp Zoom in on locus 1 x15 CRISPR array Location: 471-1419 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 471-1419 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 471-1419 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: RQZY01000375.1 Clostridioides difficile strain 17-220-06564 MRSN510002_contig00375, whole genome shotgun sequence

⇒Summary: seq-len = 6856 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 141-628 bp Zoom in on locus 1 x8 CRISPR array Location: 141-628 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 141-628 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 141-628 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: RQZY01000523.1 Clostridioides difficile strain 17-220-06564 MRSN510002_contig00523, whole genome shotgun sequence

⇒Summary: seq-len = 4414 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2767-3322 bp Zoom in on locus 1 x9 CRISPR array Location: 2767-3322 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 2767-3322 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2767-3322 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)