CRISPRone

CRISPRone report for GCA_003863265.1_ASM386326v1

♦ Seq 1: RQZU01000013.1 Clostridioides difficile strain 17-083-08476 MRSN469249_contig00013, whole genome shotgun sequence

⇒Summary: seq-len = 297362 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91123-91417 bp Zoom in on locus 1 x5 CRISPR array Location: 91123-91417 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 91123-91417 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91123-91417 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RQZU01000012.1 Clostridioides difficile strain 17-083-08476 MRSN469249_contig00012, whole genome shotgun sequence

⇒Summary: seq-len = 586171 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 96930-97944 bp 2 Locus 2: 259922-267787 bp 3 Locus 3: 341056-341613 bp Zoom in on locus 1 x16 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 96930-97944 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 96930-97944 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09641:cas3HD Type: Type-I Location: 259922-262330 bp Gene: cd09693:cas5 Type: Type-I Location: 262357-263154 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 263170-264183 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 264203-265678 bp Gene: pfam01881:cas6 Type: other Location: 265683-266420 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 266678-267787 bp CRISPR array Location: 341056-341613 bp Num of repeats: 9 Spacers: s16-s23 CRISPR array Location: 341056-341613 bp Num of repeats: 9 Spacers: s16-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 96930-97944 bp]: array | spacers
           [Locus range 341056-341613 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RQZU01000011.1 Clostridioides difficile strain 17-083-08476 MRSN469249_contig00011, whole genome shotgun sequence

⇒Summary: seq-len = 375476 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73370-73529 bp 2 Locus 2: 124442-125389 bp Zoom in on locus 1 x3 Zoom in on locus 2 x15 CRISPR array Location: 73370-73529 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 73370-73529 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 124442-125389 bp Num of repeats: 15 Spacers: s3-s16 CRISPR array Location: 124442-125389 bp Num of repeats: 15 Spacers: s3-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73370-73529 bp]: array | spacers
           [Locus range 124442-125389 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RQZU01000044.1 Clostridioides difficile strain 17-083-08476 MRSN469249_contig00044, whole genome shotgun sequence

⇒Summary: seq-len = 77451 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1343-5007 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 1343-2116 bp Gene: unk Type: unknown Location: 2109-3653 bp Gene: pfam13280:WYL Type: other Location: 4055-4411 bp Gene: pfam13280:WYL Type: other Location: 4435-5007 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RQZU01000027.1 Clostridioides difficile strain 17-083-08476 MRSN469249_contig00027, whole genome shotgun sequence

⇒Summary: seq-len = 111660 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92674-93233 bp Zoom in on locus 1 x9 CRISPR array Location: 92674-93233 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 92674-93233 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 92674-93233 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RQZU01000003.1 Clostridioides difficile strain 17-083-08476 MRSN469249_contig00003, whole genome shotgun sequence

⇒Summary: seq-len = 299411 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78834-90069 bp Zoom in on locus 1 x26 CRISPR array Location: 78834-80504 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 78834-80504 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 80688-80954 bp Gene: cd09722:cas1 Type: universal Location: 80957-81937 bp Gene: pfam01930:cas4 Type: Type-I Location: 81940-82458 bp Gene: COG1203:cas3 Type: Type-I Location: 82506-84827 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 84838-85539 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 85541-86455 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 86457-88334 bp Gene: pfam01881:cas6 Type: other Location: 88340-89134 bp Gene: pfam13280:WYL Type: other Location: 89155-90069 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 78834-80504 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: RQZU01000014.1 Clostridioides difficile strain 17-083-08476 MRSN469249_contig00014, whole genome shotgun sequence

⇒Summary: seq-len = 14180 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8749-9107 bp Zoom in on locus 1 x6 CRISPR array Location: 8749-9107 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 8749-9107 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8749-9107 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: RQZU01000007.1 Clostridioides difficile strain 17-083-08476 MRSN469249_contig00007, whole genome shotgun sequence

⇒Summary: seq-len = 241111 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38258-39408 bp Zoom in on locus 1 x18 CRISPR array Location: 38258-39408 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 38258-39408 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38258-39408 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)