CRISPRone

CRISPRone report for GCA_003863305.1_ASM386330v1

♦ Seq 1: RQZP01000019.1 Clostridioides difficile strain 17-072-06210 MRSN469106_contig00019, whole genome shotgun sequence

⇒Summary: seq-len = 49621 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5076-6231 bp Zoom in on locus 1 x18 CRISPR array Location: 5076-6231 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 5076-6231 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5076-6231 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RQZP01000021.1 Clostridioides difficile strain 17-072-06210 MRSN469106_contig00021, whole genome shotgun sequence

⇒Summary: seq-len = 76510 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 57533-57893 bp Zoom in on locus 1 x6 CRISPR array Location: 57533-57893 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 57533-57893 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 57533-57893 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RQZP01000028.1 Clostridioides difficile strain 17-072-06210 MRSN469106_contig00028, whole genome shotgun sequence

⇒Summary: seq-len = 35713 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13504-15689 bp Zoom in on locus 1 x5 x2 CRISPR array Location: 13504-13798 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 13504-13798 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 15596-15689 bp Num of repeats: 2 Spacers: s5-s5 CRISPR array Location: 15596-15689 bp Num of repeats: 2 Spacers: s5-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13504-13798 bp]: array | spacers
           [Locus range 15596-15689 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RQZP01000049.1 Clostridioides difficile strain 17-072-06210 MRSN469106_contig00049, whole genome shotgun sequence

⇒Summary: seq-len = 24672 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10659-10884 bp Zoom in on locus 1 x4 CRISPR array Location: 10659-10884 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 10659-10884 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10659-10884 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RQZP01000006.1 Clostridioides difficile strain 17-072-06210 MRSN469106_contig00006, whole genome shotgun sequence

⇒Summary: seq-len = 916427 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 422585-424136 bp 2 Locus 2: 589499-597817 bp 3 Locus 3: 671097-671786 bp Zoom in on locus 1 x24 Zoom in on locus 2 Zoom in on locus 3 x11 CRISPR array Location: 422585-424136 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 422585-424136 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09641:cas3HD Type: Type-I Location: 589499-591907 bp Gene: cd09693:cas5 Type: Type-I Location: 591934-592731 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 592747-593760 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 593780-595255 bp Gene: pfam01881:cas6 Type: other Location: 595260-595997 bp Gene: unk Type: unknown Location: 596098-596274 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 596708-597817 bp CRISPR array Location: 671097-671786 bp Num of repeats: 11 Spacers: s24-s33 CRISPR array Location: 671097-671786 bp Num of repeats: 11 Spacers: s24-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 422585-424136 bp]: array | spacers
           [Locus range 671097-671786 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RQZP01000007.1 Clostridioides difficile strain 17-072-06210 MRSN469106_contig00007, whole genome shotgun sequence

⇒Summary: seq-len = 494876 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 248058-260082 bp 2 Locus 2: 459399-466416 bp Zoom in on locus 1 x38 Zoom in on locus 2 x13 CRISPR array Location: 248058-250517 bp Num of repeats: 38 Spacers: s1-s37 CRISPR array Location: 248058-250517 bp Num of repeats: 38 Spacers: s1-s37 Gene: cd09725:cas2 Type: universal Location: 250701-250967 bp Gene: cd09722:cas1 Type: universal Location: 250970-251950 bp Gene: pfam01930:cas4 Type: Type-I Location: 251953-252471 bp Gene: cd09641:cas3HD Type: Type-I Location: 252519-254840 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 254851-255552 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 255554-256468 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 256470-258347 bp Gene: pfam01881:cas6 Type: other Location: 258353-259147 bp Gene: pfam13280:WYL Type: other Location: 259168-260082 bp CRISPR array Location: 459399-460214 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 459399-460214 bp Num of repeats: 13 Spacers: s38-s49 Gene: COG1203:cas3 Type: Type-I Location: 460780-462762 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 462773-463843 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 463864-465012 bp Gene: pfam01881:cas6 Type: other Location: 465014-465778 bp Gene: cd09693:cas5 Type: Type-I Location: 465769-466416 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 248058-250517 bp]: array | spacers
           [Locus range 459399-460214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: RQZP01000022.1 Clostridioides difficile strain 17-072-06210 MRSN469106_contig00022, whole genome shotgun sequence

⇒Summary: seq-len = 91755 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91150-91771 bp Zoom in on locus 1 x10 CRISPR array Location: 91150-91771 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 91150-91771 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91150-91771 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: RQZP01000045.1 Clostridioides difficile strain 17-072-06210 MRSN469106_contig00045, whole genome shotgun sequence

⇒Summary: seq-len = 49499 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19104-19987 bp Zoom in on locus 1 x14 CRISPR array Location: 19104-19987 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 19104-19987 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19104-19987 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: RQZP01000023.1 Clostridioides difficile strain 17-072-06210 MRSN469106_contig00023, whole genome shotgun sequence

⇒Summary: seq-len = 119066 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-213 bp Zoom in on locus 1 x4 CRISPR array Location: 0-213 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-213 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-213 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: RQZP01000040.1 Clostridioides difficile strain 17-072-06210 MRSN469106_contig00040, whole genome shotgun sequence

⇒Summary: seq-len = 97155 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38104-40648 bp Zoom in on locus 1 x39 CRISPR array Location: 38104-40648 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 38104-40648 bp Num of repeats: 39 Spacers: s1-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38104-40648 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)