CRISPRone

CRISPRone report for GCA_003863425.1_ASM386342v1

♦ Seq 1: RRBY01000071.1 Pseudomonas aeruginosa strain 1713 1713_NODE_71_length_18025_cov_67.6079, whole genome shotgun sequence

⇒Summary: seq-len = 18025 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132-881 bp Zoom in on locus 1 x13 CRISPR array Location: 132-881 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 132-881 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 132-881 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRBY01000049.1 Pseudomonas aeruginosa strain 1713 1713_NODE_49_length_36490_cov_73.5368, whole genome shotgun sequence

⇒Summary: seq-len = 36490 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25820-36359 bp Zoom in on locus 1 x18 x10 CRISPR array Location: 25820-26868 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 25820-26868 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09739:cas6f Type: other Location: 27051-27614 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27618-28646 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28657-29640 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 29627-30928 bp Gene: COG1203:cas3 Type: Type-I Location: 31339-34569 bp Gene: cd09718:cas1 Type: universal Location: 34566-35540 bp CRISPR array Location: 35792-36359 bp Num of repeats: 10 Spacers: s18-s26 CRISPR array Location: 35792-36359 bp Num of repeats: 10 Spacers: s18-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25820-26868 bp]: array | spacers
           [Locus range 35792-36359 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)