CRISPRone

CRISPRone report for GCA_003863445.1_ASM386344v1

♦ Seq 1: RRBX01000009.1 Pseudomonas aeruginosa strain 1689 1689_NODE_9_length_186669_cov_89.9319, whole genome shotgun sequence

⇒Summary: seq-len = 186669 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38044-48662 bp Zoom in on locus 1 x22 x13 CRISPR array Location: 38044-39329 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 38044-39329 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09739:cas6f Type: other Location: 39513-40076 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40080-41108 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41119-42102 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42089-43393 bp Gene: COG1203:cas3 Type: Type-I Location: 43451-46681 bp Gene: cd09718:cas1 Type: universal Location: 46678-47652 bp CRISPR array Location: 47914-48662 bp Num of repeats: 13 Spacers: s22-s33 CRISPR array Location: 47914-48662 bp Num of repeats: 13 Spacers: s22-s33 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38044-39329 bp]: array | spacers
           [Locus range 47914-48662 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRBX01000003.1 Pseudomonas aeruginosa strain 1689 1689_NODE_3_length_385426_cov_90.2016, whole genome shotgun sequence

⇒Summary: seq-len = 385426 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17181-18228 bp Zoom in on locus 1 x18 CRISPR array Location: 17181-18228 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 17181-18228 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17181-18228 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)