CRISPRone

CRISPRone report for GCA_003863465.1_ASM386346v1

♦ Seq 1: RRBW01000016.1 Pseudomonas aeruginosa strain 1671 1671_NODE_16_length_123691_cov_92.5866, whole genome shotgun sequence

⇒Summary: seq-len = 123691 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 122488-123535 bp Zoom in on locus 1 x18 CRISPR array Location: 122488-123535 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 122488-123535 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 122488-123535 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRBW01000305.1 Pseudomonas aeruginosa strain 1671 1671_NODE_305_length_540_cov_1.31749, whole genome shotgun sequence

⇒Summary: seq-len = 540 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-539 bp Zoom in on locus 1 Gene: cd09720:cas1 Type: universal Location: 2-367 bp Gene: pfam09827:cas2 Type: universal Location: 414-539 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RRBW01000046.1 Pseudomonas aeruginosa strain 1671 1671_NODE_46_length_41739_cov_82.145, whole genome shotgun sequence

⇒Summary: seq-len = 41739 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30965-41583 bp Zoom in on locus 1 x22 x13 CRISPR array Location: 30965-32250 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 30965-32250 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09739:cas6f Type: other Location: 32434-32997 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 33001-34029 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 34040-35023 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 35010-36314 bp Gene: COG1203:cas3 Type: Type-I Location: 36372-39602 bp Gene: cd09718:cas1 Type: universal Location: 39599-40573 bp CRISPR array Location: 40835-41583 bp Num of repeats: 13 Spacers: s22-s33 CRISPR array Location: 40835-41583 bp Num of repeats: 13 Spacers: s22-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 30965-32250 bp]: array | spacers
           [Locus range 40835-41583 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)