CRISPRone

CRISPRone report for GCA_003863515.1_ASM386351v1

♦ Seq 1: RRBR01000013.1 Pseudomonas aeruginosa strain 1653 1653_NODE_13_length_143695_cov_98.2495, whole genome shotgun sequence

⇒Summary: seq-len = 143695 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 142756-143564 bp Zoom in on locus 1 x14 CRISPR array Location: 142756-143564 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 142756-143564 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 142756-143564 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRBR01000040.1 Pseudomonas aeruginosa strain 1653 1653_NODE_40_length_48775_cov_93.3259, whole genome shotgun sequence

⇒Summary: seq-len = 48775 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38045-48644 bp Zoom in on locus 1 x18 x11 CRISPR array Location: 38045-39093 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 38045-39093 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09739:cas6f Type: other Location: 39276-39839 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39843-40871 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40882-41865 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41852-43153 bp Gene: COG1203:cas3 Type: Type-I Location: 43564-46794 bp Gene: cd09718:cas1 Type: universal Location: 46791-47765 bp CRISPR array Location: 48017-48644 bp Num of repeats: 11 Spacers: s18-s27 CRISPR array Location: 48017-48644 bp Num of repeats: 11 Spacers: s18-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38045-39093 bp]: array | spacers
           [Locus range 48017-48644 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)