CRISPRone

CRISPRone report for GCA_003863685.1_ASM386368v1

♦ Seq 1: RRBZ01000002.1 Pseudomonas aeruginosa strain 1714 1714_NODE_3_length_396603_cov_98.1906, whole genome shotgun sequence

⇒Summary: seq-len = 396603 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 270849-276469 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 270849-272705 bp Gene: unk Type: unknown Location: 272976-274367 bp Gene: unk Type: unknown Location: 274414-274716 bp Gene: pfam13280:WYL Type: other Location: 275083-275994 bp Gene: mkCas0115:csx3 Type: other Location: 276002-276469 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRBZ01000044.1 Pseudomonas aeruginosa strain 1714 1714_NODE_57_length_40785_cov_79.3589, whole genome shotgun sequence

⇒Summary: seq-len = 40785 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31001-40703 bp Zoom in on locus 1 x14 x2 x3 CRISPR array Location: 31001-31809 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 31001-31809 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 31992-32555 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 32559-33587 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 33598-34581 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 34568-35872 bp Gene: COG1203:cas3 Type: Type-I Location: 35930-39160 bp Gene: cd09718:cas1 Type: universal Location: 39157-40131 bp CRISPR array Location: 40396-40483 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 40396-40483 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 40556-40703 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 40556-40703 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31001-31809 bp]: array | spacers
           [Locus range 40396-40483 bp]: array | spacers
           [Locus range 40556-40703 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RRBZ01000104.1 Pseudomonas aeruginosa strain 1714 1714_NODE_127_length_2411_cov_72.9229, whole genome shotgun sequence

⇒Summary: seq-len = 2411 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 83-1251 bp Zoom in on locus 1 x20 CRISPR array Location: 83-1251 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 83-1251 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 83-1251 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)