CRISPRone

CRISPRone report for GCA_003863775.1_ASM386377v1

♦ Seq 1: RRBO01000043.1 Pseudomonas aeruginosa strain 1631 1631_NODE_43_length_20937_cov_77.3253, whole genome shotgun sequence

⇒Summary: seq-len = 20937 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20230-20797 bp Zoom in on locus 1 x10 CRISPR array Location: 20230-20797 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 20230-20797 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20230-20797 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRBO01000004.1 Pseudomonas aeruginosa strain 1631 1631_NODE_4_length_365912_cov_83.139, whole genome shotgun sequence

⇒Summary: seq-len = 365912 bp; # of CRISPR array = 2; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38036-47185 bp Zoom in on locus 1 x16 x4 Gene: cd09641:cas3HD Type: Type-I Location: 38036-40270 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 40320-40994 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 40991-42784 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 42781-43650 bp Gene: pfam01930:cas4 Type: Type-I Location: 43669-44301 bp Gene: cd09721:cas1 Type: universal Location: 44305-45345 bp Gene: cd09725:cas2 Type: universal Location: 45355-45645 bp CRISPR array Location: 45827-46853 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 45827-46853 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 46954-47185 bp Num of repeats: 4 Spacers: s16-s18 CRISPR array Location: 46954-47185 bp Num of repeats: 4 Spacers: s16-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45827-46853 bp]: array | spacers
           [Locus range 46954-47185 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)