CRISPRone

CRISPRone report for GCA_003863825.1_ASM386382v1

♦ Seq 1: RRBG01000002.1 Pseudomonas aeruginosa strain 1510 1510_NODE_2_length_532025_cov_109.904, whole genome shotgun sequence

⇒Summary: seq-len = 532025 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 145205-145952 bp Zoom in on locus 1 x13 CRISPR array Location: 145205-145952 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 145205-145952 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 145205-145952 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRBG01000027.1 Pseudomonas aeruginosa strain 1510 1510_NODE_27_length_68930_cov_102.813, whole genome shotgun sequence

⇒Summary: seq-len = 68930 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21474-31432 bp Zoom in on locus 1 x4 x20 CRISPR array Location: 21474-21682 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 21474-21682 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09718:cas1 Type: universal Location: 21942-22916 bp Gene: COG1203:cas3 Type: Type-I Location: 22913-26143 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 26201-27505 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 27492-28475 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 28486-29514 bp Gene: cd09739:cas6f Type: other Location: 29518-30081 bp CRISPR array Location: 30266-31432 bp Num of repeats: 20 Spacers: s4-s22 CRISPR array Location: 30266-31432 bp Num of repeats: 20 Spacers: s4-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21474-21682 bp]: array | spacers
           [Locus range 30266-31432 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)