CRISPRone

CRISPRone report for GCA_003863855.1_ASM386385v1

♦ Seq 1: RRBE01000030.1 Pseudomonas aeruginosa strain 1463 1463_NODE_30_length_69264_cov_78.1634, whole genome shotgun sequence

⇒Summary: seq-len = 69264 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37341-47780 bp Zoom in on locus 1 x19 x13 CRISPR array Location: 37341-38449 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 37341-38449 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 38632-39195 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39199-40227 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40238-41221 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41208-42512 bp Gene: COG1203:cas3 Type: Type-I Location: 42570-45800 bp Gene: cd09718:cas1 Type: universal Location: 45797-46771 bp CRISPR array Location: 47032-47780 bp Num of repeats: 13 Spacers: s19-s30 CRISPR array Location: 47032-47780 bp Num of repeats: 13 Spacers: s19-s30 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37341-38449 bp]: array | spacers
           [Locus range 47032-47780 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRBE01000004.1 Pseudomonas aeruginosa strain 1463 1463_NODE_4_length_291506_cov_83.5762, whole genome shotgun sequence

⇒Summary: seq-len = 291506 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 272815-283110 bp Zoom in on locus 1 x16 x12 CRISPR array Location: 272815-273758 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 272815-273758 bp Num of repeats: 16 Spacers: s1-s15 Gene: pfam09707:cas2 Type: universal Location: 273823-274122 bp Gene: cd09719:cas1 Type: universal Location: 274119-274430 bp Gene: pfam08798:cas6e Type: other Location: 274457-274996 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 275043-275705 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 275707-276849 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 276859-277389 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 277386-278954 bp Gene: cd09641:cas3HD Type: Type-I Location: 278957-281638 bp CRISPR array Location: 282411-283110 bp Num of repeats: 12 Spacers: s16-s26 CRISPR array Location: 282411-283110 bp Num of repeats: 12 Spacers: s16-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 272815-273758 bp]: array | spacers
           [Locus range 282411-283110 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)