CRISPRone

CRISPRone report for GCA_003863945.1_ASM386394v1

♦ Seq 1: RRBD01000062.1 Pseudomonas aeruginosa strain 1442 1442_NODE_62_length_18044_cov_63.6946, whole genome shotgun sequence

⇒Summary: seq-len = 18044 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132-881 bp Zoom in on locus 1 x13 CRISPR array Location: 132-881 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 132-881 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 132-881 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RRBD01000045.1 Pseudomonas aeruginosa strain 1442 1442_NODE_45_length_41318_cov_60.8585, whole genome shotgun sequence

⇒Summary: seq-len = 41318 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132-10369 bp Zoom in on locus 1 x10 x13 CRISPR array Location: 132-700 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 132-700 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 951-1925 bp Gene: COG1203:cas3 Type: Type-I Location: 1922-5152 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5563-6864 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6851-7834 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7845-8873 bp Gene: cd09739:cas6f Type: other Location: 8877-9440 bp CRISPR array Location: 9623-10369 bp Num of repeats: 13 Spacers: s10-s21 CRISPR array Location: 9623-10369 bp Num of repeats: 13 Spacers: s10-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 132-700 bp]: array | spacers
           [Locus range 9623-10369 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)