CRISPRone

CRISPRone report for GCA_003932645.1_ASM393264v1

♦ Seq 1: RQZL01000001.1 Clostridioides difficile strain 16-342-13560 MRSN439682_contig00001, whole genome shotgun sequence

⇒Summary: seq-len = 1097038 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252522-252683 bp 2 Locus 2: 613220-613645 bp 3 Locus 3: 776175-784509 bp 4 Locus 4: 857791-857884 bp Zoom in on locus 1 x3 Zoom in on locus 2 x7 Zoom in on locus 3 Zoom in on locus 4 x2 CRISPR array Location: 252522-252683 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 252522-252683 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 613220-613645 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 613220-613645 bp Num of repeats: 7 Spacers: s3-s8 Gene: cd09641:cas3HD Type: Type-I Location: 776175-778583 bp Gene: cd09693:cas5 Type: Type-I Location: 778610-779407 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 779423-780436 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 780456-781922 bp Gene: pfam01881:cas6 Type: other Location: 781927-782664 bp Gene: unk Type: unknown Location: 782765-782941 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 783400-784509 bp CRISPR array Location: 857791-857884 bp Num of repeats: 2 Spacers: s9-s9 CRISPR array Location: 857791-857884 bp Num of repeats: 2 Spacers: s9-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252522-252683 bp]: array | spacers
           [Locus range 613220-613645 bp]: array | spacers
           [Locus range 857791-857884 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RQZL01000009.1 Clostridioides difficile strain 16-342-13560 MRSN439682_contig00009, whole genome shotgun sequence

⇒Summary: seq-len = 125198 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63531-64549 bp Zoom in on locus 1 x16 CRISPR array Location: 63531-64549 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 63531-64549 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63531-64549 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RQZL01000029.1 Clostridioides difficile strain 16-342-13560 MRSN439682_contig00028, whole genome shotgun sequence

⇒Summary: seq-len = 211967 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120527-121019 bp Zoom in on locus 1 x8 CRISPR array Location: 120527-121019 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 120527-121019 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120527-121019 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RQZL01000017.1 Clostridioides difficile strain 16-342-13560 MRSN439682_contig00017, whole genome shotgun sequence

⇒Summary: seq-len = 14295 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9008-9232 bp Zoom in on locus 1 x4 CRISPR array Location: 9008-9232 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 9008-9232 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9008-9232 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RQZL01000010.1 Clostridioides difficile strain 16-342-13560 MRSN439682_contig00010, whole genome shotgun sequence

⇒Summary: seq-len = 187233 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73490-77366 bp 2 Locus 2: 168980-169603 bp Zoom in on locus 1 x2 x14 x6 x2 Zoom in on locus 2 x10 CRISPR array Location: 73490-73584 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 73490-73584 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 75366-76252 bp Num of repeats: 14 Spacers: s2-s14 CRISPR array Location: 75366-76252 bp Num of repeats: 14 Spacers: s2-s14 CRISPR array Location: 76855-77212 bp Num of repeats: 6 Spacers: s15-s19 CRISPR array Location: 76855-77212 bp Num of repeats: 6 Spacers: s15-s19 CRISPR array Location: 77274-77366 bp Num of repeats: 2 Spacers: s20-s20 CRISPR array Location: 77274-77366 bp Num of repeats: 2 Spacers: s20-s20 CRISPR array Location: 168980-169603 bp Num of repeats: 10 Spacers: s21-s29 CRISPR array Location: 168980-169603 bp Num of repeats: 10 Spacers: s21-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73490-73584 bp]: array | spacers
           [Locus range 75366-76252 bp]: array | spacers
           [Locus range 76855-77212 bp]: array | spacers
           [Locus range 77274-77366 bp]: array | spacers
           [Locus range 168980-169603 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)