CRISPRone

CRISPRone report for GCA_003932675.1_ASM393267v1

♦ Seq 1: RQZN01000002.1 Clostridioides difficile strain 16-347-07886 MRSN439725_contig00002, whole genome shotgun sequence

⇒Summary: seq-len = 360074 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33868-41733 bp 2 Locus 2: 114981-115538 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: cd09641:cas3HD Type: Type-I Location: 33868-36276 bp Gene: cd09693:cas5 Type: Type-I Location: 36303-37100 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 37116-38129 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 38149-39624 bp Gene: pfam01881:cas6 Type: other Location: 39629-40366 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 40624-41733 bp CRISPR array Location: 114981-115538 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 114981-115538 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 114981-115538 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RQZN01000021.1 Clostridioides difficile strain 16-347-07886 MRSN439725_contig00021, whole genome shotgun sequence

⇒Summary: seq-len = 489398 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189449-189676 bp 2 Locus 2: 397818-398239 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 CRISPR array Location: 189449-189676 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 189449-189676 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 397818-398239 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 397818-398239 bp Num of repeats: 7 Spacers: s4-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189449-189676 bp]: array | spacers
           [Locus range 397818-398239 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RQZN01000001.1 Clostridioides difficile strain 16-347-07886 MRSN439725_contig00001, whole genome shotgun sequence

⇒Summary: seq-len = 842189 bp; # of CRISPR array = 4; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38126-38487 bp 2 Locus 2: 356360-356521 bp 3 Locus 3: 511976-523901 bp 4 Locus 4: 713404-714089 bp Zoom in on locus 1 x6 Zoom in on locus 2 x3 Zoom in on locus 3 x44 Zoom in on locus 4 x11 CRISPR array Location: 38126-38487 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38126-38487 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 356360-356521 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 356360-356521 bp Num of repeats: 3 Spacers: s6-s7 Gene: cd09725:cas2 Type: universal Location: 511976-512266 bp Gene: cd09722:cas1 Type: universal Location: 512477-513484 bp Gene: pfam01930:cas4 Type: Type-I Location: 513510-514004 bp CRISPR array Location: 514089-516959 bp Num of repeats: 44 Spacers: s8-s50 CRISPR array Location: 514089-516959 bp Num of repeats: 44 Spacers: s8-s50 Gene: cd09641:cas3HD Type: Type-I Location: 517149-519707 bp Gene: cd09693:cas5 Type: Type-I Location: 519731-520471 bp Gene: pfam05107:cas7b Type: Type-I Location: 520473-521462 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 521455-523194 bp Gene: cd09652:cas6 Type: other Location: 523206-523901 bp CRISPR array Location: 713404-714089 bp Num of repeats: 11 Spacers: s51-s60 CRISPR array Location: 713404-714089 bp Num of repeats: 11 Spacers: s51-s60 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38126-38487 bp]: array | spacers
           [Locus range 356360-356521 bp]: array | spacers
           [Locus range 514089-516959 bp]: array | spacers
           [Locus range 713404-714089 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RQZN01000029.1 Clostridioides difficile strain 16-347-07886 MRSN439725_contig00029, whole genome shotgun sequence

⇒Summary: seq-len = 131974 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19135-19362 bp Zoom in on locus 1 x4 CRISPR array Location: 19135-19362 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 19135-19362 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19135-19362 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)