CRISPRone

CRISPRone report for GCA_003932695.1_ASM393269v1

♦ Seq 1: RQZK01000003.1 Clostridioides difficile strain 16-339-08888 MRSN439673_contig00003, whole genome shotgun sequence

⇒Summary: seq-len = 96348 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20767-27300 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 20767-21414 bp Gene: pfam01881:cas6 Type: other Location: 21405-22169 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 22171-23337 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 23358-24428 bp Gene: COG1203:cas3 Type: Type-I Location: 24439-26424 bp CRISPR array Location: 26677-27300 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 26677-27300 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26677-27300 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RQZK01000008.1 Clostridioides difficile strain 16-339-08888 MRSN439673_contig00008, whole genome shotgun sequence

⇒Summary: seq-len = 236486 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183362-191237 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 183362-184471 bp Gene: pfam01881:cas6 Type: other Location: 184730-185467 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 185472-186947 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 186967-187980 bp Gene: cd09693:cas5 Type: Type-I Location: 187996-188802 bp Gene: cd09641:cas3HD Type: Type-I Location: 188829-191237 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RQZK01000004.1 Clostridioides difficile strain 16-339-08888 MRSN439673_contig00004, whole genome shotgun sequence

⇒Summary: seq-len = 354116 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 299309-300002 bp 2 Locus 2: 341622-341717 bp Zoom in on locus 1 x11 Zoom in on locus 2 x2 CRISPR array Location: 299309-300002 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 299309-300002 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 341622-341717 bp Num of repeats: 2 Spacers: s11-s11 CRISPR array Location: 341622-341717 bp Num of repeats: 2 Spacers: s11-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 299309-300002 bp]: array | spacers
           [Locus range 341622-341717 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RQZK01000007.1 Clostridioides difficile strain 16-339-08888 MRSN439673_contig00007, whole genome shotgun sequence

⇒Summary: seq-len = 289162 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78210-78896 bp 2 Locus 2: 287285-288305 bp Zoom in on locus 1 x11 Zoom in on locus 2 x16 CRISPR array Location: 78210-78896 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 78210-78896 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 287285-288305 bp Num of repeats: 16 Spacers: s11-s25 CRISPR array Location: 287285-288305 bp Num of repeats: 16 Spacers: s11-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78210-78896 bp]: array | spacers
           [Locus range 287285-288305 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RQZK01000005.1 Clostridioides difficile strain 16-339-08888 MRSN439673_contig00005, whole genome shotgun sequence

⇒Summary: seq-len = 258411 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 195957-197041 bp Zoom in on locus 1 x17 CRISPR array Location: 195957-197041 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 195957-197041 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 195957-197041 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RQZK01000020.1 Clostridioides difficile strain 16-339-08888 MRSN439673_contig00020, whole genome shotgun sequence

⇒Summary: seq-len = 148899 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30619-30913 bp 2 Locus 2: 123296-125807 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 CRISPR array Location: 30619-30913 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 30619-30913 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 123296-123653 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 123296-123653 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 125517-125807 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 125517-125807 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30619-30913 bp]: array | spacers
           [Locus range 123296-123653 bp]: array | spacers
           [Locus range 125517-125807 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: RQZK01000019.1 Clostridioides difficile strain 16-339-08888 MRSN439673_contig00019, whole genome shotgun sequence

⇒Summary: seq-len = 168862 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16345-26680 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 16345-17259 bp Gene: pfam01881:cas6 Type: other Location: 17337-18074 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18080-19957 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 19959-20873 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 20875-21576 bp Gene: COG1203:cas3 Type: Type-I Location: 21587-23908 bp Gene: pfam01930:cas4 Type: Type-I Location: 23905-24474 bp Gene: cd09722:cas1 Type: universal Location: 24477-25457 bp Gene: cd09725:cas2 Type: universal Location: 25460-25726 bp CRISPR array Location: 25910-27527 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 25910-27527 bp Num of repeats: 25 Spacers: s1-s24 Gene: unk Type: unknown Location: 26058-26225 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26447-26680 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25910-27527 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)