CRISPRone

CRISPRone report for GCA_003935835.1_ASM393583v1

♦ Seq 1: RHSV01000048.1 Pseudomonas aeruginosa strain PA_060 NODE_48_length_10483_cov_14.9086, whole genome shotgun sequence

⇒Summary: seq-len = 10483 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 109-10316 bp Zoom in on locus 1 x10 x17 CRISPR array Location: 109-678 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 109-678 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 927-1490 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1494-2522 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2533-3516 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3503-4807 bp Gene: COG1203:cas3 Type: Type-I Location: 4865-8095 bp Gene: cd09718:cas1 Type: universal Location: 8092-9066 bp CRISPR array Location: 9327-10316 bp Num of repeats: 17 Spacers: s10-s25 CRISPR array Location: 9327-10316 bp Num of repeats: 17 Spacers: s10-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 109-678 bp]: array | spacers
           [Locus range 9327-10316 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RHSV01000016.1 Pseudomonas aeruginosa strain PA_060 NODE_16_length_131704_cov_15.182, whole genome shotgun sequence

⇒Summary: seq-len = 131704 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 130790-131537 bp Zoom in on locus 1 x13 CRISPR array Location: 130790-131537 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 130790-131537 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 130790-131537 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RHSV01000038.1 Pseudomonas aeruginosa strain PA_060 NODE_38_length_34663_cov_12.0758, whole genome shotgun sequence

⇒Summary: seq-len = 34663 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190-637 bp Zoom in on locus 1 x8 CRISPR array Location: 190-637 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 190-637 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190-637 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)