CRISPRone

CRISPRone report for GCA_003936225.1_ASM393622v1

♦ Seq 1: RHSD01000028.1 Pseudomonas aeruginosa strain PA_286 NODE_28_length_71707_cov_28.075094, whole genome shotgun sequence

⇒Summary: seq-len = 71707 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 338-12272 bp Zoom in on locus 1 x17 x10 x8 CRISPR array Location: 338-1328 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 338-1328 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09718:cas1 Type: universal Location: 1588-2562 bp Gene: COG1203:cas3 Type: Type-I Location: 2559-5789 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5847-7151 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7138-8121 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8132-9160 bp Gene: cd09739:cas6f Type: other Location: 9164-9727 bp CRISPR array Location: 9977-10545 bp Num of repeats: 10 Spacers: s17-s25 CRISPR array Location: 9977-10545 bp Num of repeats: 10 Spacers: s17-s25 CRISPR array Location: 11825-12272 bp Num of repeats: 8 Spacers: s26-s32 CRISPR array Location: 11825-12272 bp Num of repeats: 8 Spacers: s26-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 338-1328 bp]: array | spacers
           [Locus range 9977-10545 bp]: array | spacers
           [Locus range 11825-12272 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RHSD01000018.1 Pseudomonas aeruginosa strain PA_286 NODE_18_length_132166_cov_28.914679, whole genome shotgun sequence

⇒Summary: seq-len = 132166 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 631-1379 bp Zoom in on locus 1 x13 CRISPR array Location: 631-1379 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 631-1379 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 631-1379 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)