CRISPRone

CRISPRone report for GCA_003936235.1_ASM393623v1

♦ Seq 1: RHSA01000051.1 Pseudomonas aeruginosa strain PA_298 NODE_51_length_36999_cov_23.881, whole genome shotgun sequence

⇒Summary: seq-len = 36999 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36363-36811 bp Zoom in on locus 1 x8 CRISPR array Location: 36363-36811 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 36363-36811 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36363-36811 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RHSA01000094.1 Pseudomonas aeruginosa strain PA_298 NODE_94_length_10663_cov_31.309, whole genome shotgun sequence

⇒Summary: seq-len = 10663 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 109-10316 bp Zoom in on locus 1 x10 x17 CRISPR array Location: 109-678 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 109-678 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 927-1490 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1494-2522 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2533-3516 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3503-4807 bp Gene: COG1203:cas3 Type: Type-I Location: 4865-8095 bp Gene: cd09718:cas1 Type: universal Location: 8092-9066 bp CRISPR array Location: 9327-10316 bp Num of repeats: 17 Spacers: s10-s25 CRISPR array Location: 9327-10316 bp Num of repeats: 17 Spacers: s10-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 109-678 bp]: array | spacers
           [Locus range 9327-10316 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RHSA01000002.1 Pseudomonas aeruginosa strain PA_298 NODE_2_length_384466_cov_29.9788, whole genome shotgun sequence

⇒Summary: seq-len = 384466 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95830-96577 bp Zoom in on locus 1 x13 CRISPR array Location: 95830-96577 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 95830-96577 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 95830-96577 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)