CRISPRone

CRISPRone report for GCA_003937395.1_ASM393739v1

♦ Seq 1: RHSR01000047.1 Pseudomonas aeruginosa strain PA_113 NODE_47_length_10653_cov_14.4818, whole genome shotgun sequence

⇒Summary: seq-len = 10653 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 338-10545 bp Zoom in on locus 1 x17 x10 CRISPR array Location: 338-1328 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 338-1328 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09718:cas1 Type: universal Location: 1588-2562 bp Gene: COG1203:cas3 Type: Type-I Location: 2559-5789 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5847-7151 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7138-8121 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8132-9160 bp Gene: cd09739:cas6f Type: other Location: 9164-9727 bp CRISPR array Location: 9977-10545 bp Num of repeats: 10 Spacers: s17-s25 CRISPR array Location: 9977-10545 bp Num of repeats: 10 Spacers: s17-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 338-1328 bp]: array | spacers
           [Locus range 9977-10545 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RHSR01000038.1 Pseudomonas aeruginosa strain PA_113 NODE_38_length_36999_cov_12.1302, whole genome shotgun sequence

⇒Summary: seq-len = 36999 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36363-36811 bp Zoom in on locus 1 x8 CRISPR array Location: 36363-36811 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 36363-36811 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36363-36811 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RHSR01000048.1 Pseudomonas aeruginosa strain PA_113 NODE_48_length_8123_cov_16.3064, whole genome shotgun sequence

⇒Summary: seq-len = 8123 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 339-1087 bp Zoom in on locus 1 x13 CRISPR array Location: 339-1087 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 339-1087 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 339-1087 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)