CRISPRone

CRISPRone report for GCA_003938805.1_ASM393880v1

♦ Seq 1: RKJI01000001.1 Pseudomonas aeruginosa strain FDAARGOS_502 tig00000000_pilon, whole genome shotgun sequence

⇒Summary: seq-len = 7087687 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2677828-2680035 bp 2 Locus 2: 3631892-3644007 bp Zoom in on locus 1 Zoom in on locus 2 x9 x8 x21 Gene: cd09693:cas5 Type: Type-I Location: 2677828-2678235 bp Gene: unk Type: unknown Location: 2678269-2678955 bp Gene: COG2378:WYL Type: other Location: 2679064-2680035 bp CRISPR array Location: 3631892-3632400 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 3631892-3632400 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 3633679-3634128 bp Num of repeats: 8 Spacers: s9-s15 CRISPR array Location: 3633679-3634128 bp Num of repeats: 8 Spacers: s9-s15 Gene: cd09739:cas6f Type: other Location: 3634377-3634940 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 3634944-3635972 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3635983-3636966 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3636953-3638257 bp Gene: COG1203:cas3 Type: Type-I Location: 3638315-3641545 bp Gene: cd09718:cas1 Type: universal Location: 3641542-3642516 bp CRISPR array Location: 3642777-3644007 bp Num of repeats: 21 Spacers: s16-s35 CRISPR array Location: 3642777-3644007 bp Num of repeats: 21 Spacers: s16-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3631892-3632400 bp]: array | spacers
           [Locus range 3633679-3634128 bp]: array | spacers
           [Locus range 3642777-3644007 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)