CRISPRone

CRISPRone report for GCA_003939685.1_ASM393968v1

♦ Seq 1: RHSM01000012.1 Pseudomonas aeruginosa strain PA_179 NODE_12_length_151824_cov_19.6471, whole genome shotgun sequence

⇒Summary: seq-len = 151824 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123369-133440 bp Zoom in on locus 1 Gene: cd09696:cas3 Type: Subtype-I-U Location: 123369-126548 bp Gene: unk Type: unknown Location: 126913-128247 bp Gene: pfam13280:WYL Type: other Location: 128376-129251 bp Gene: unk Type: unknown Location: 129389-130051 bp Gene: unk Type: unknown Location: 130033-130263 bp Gene: cd09639:cas3 Type: Type-I Location: 130315-133440 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RHSM01000027.1 Pseudomonas aeruginosa strain PA_179 NODE_27_length_48042_cov_18.0502, whole genome shotgun sequence

⇒Summary: seq-len = 48042 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37374-47875 bp Zoom in on locus 1 x16 x17 CRISPR array Location: 37374-38302 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 37374-38302 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09739:cas6f Type: other Location: 38484-39047 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39051-40079 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40090-41073 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41060-42364 bp Gene: COG1203:cas3 Type: Type-I Location: 42422-45652 bp Gene: cd09718:cas1 Type: universal Location: 45649-46623 bp CRISPR array Location: 46884-47875 bp Num of repeats: 17 Spacers: s16-s31 CRISPR array Location: 46884-47875 bp Num of repeats: 17 Spacers: s16-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37374-38302 bp]: array | spacers
           [Locus range 46884-47875 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RHSM01000006.1 Pseudomonas aeruginosa strain PA_179 NODE_6_length_408307_cov_19.4631, whole genome shotgun sequence

⇒Summary: seq-len = 408307 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 407093-408140 bp Zoom in on locus 1 x18 CRISPR array Location: 407093-408140 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 407093-408140 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 407093-408140 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)