CRISPRone

CRISPRone report for GCA_003940625.1_ASM394062v1

♦ Seq 1: RHSC01000019.1 Pseudomonas aeruginosa strain PA_289 NODE_19_length_131874_cov_33.590962, whole genome shotgun sequence

⇒Summary: seq-len = 131874 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 339-1087 bp Zoom in on locus 1 x13 CRISPR array Location: 339-1087 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 339-1087 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 339-1087 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RHSC01000028.1 Pseudomonas aeruginosa strain PA_289 NODE_28_length_72496_cov_33.261175, whole genome shotgun sequence

⇒Summary: seq-len = 72496 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59436-71370 bp Zoom in on locus 1 x8 x10 x17 CRISPR array Location: 59436-59884 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 59436-59884 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 61163-61732 bp Num of repeats: 10 Spacers: s8-s16 CRISPR array Location: 61163-61732 bp Num of repeats: 10 Spacers: s8-s16 Gene: cd09739:cas6f Type: other Location: 61981-62544 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 62548-63576 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 63587-64570 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 64557-65861 bp Gene: COG1203:cas3 Type: Type-I Location: 65919-69149 bp Gene: cd09718:cas1 Type: universal Location: 69146-70120 bp CRISPR array Location: 70381-71370 bp Num of repeats: 17 Spacers: s17-s32 CRISPR array Location: 70381-71370 bp Num of repeats: 17 Spacers: s17-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 59436-59884 bp]: array | spacers
           [Locus range 61163-61732 bp]: array | spacers
           [Locus range 70381-71370 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)