CRISPRone

CRISPRone report for GCA_003940635.1_ASM394063v1

♦ Seq 1: RHSW01000130.1 Pseudomonas aeruginosa strain PA_059 NODE_130_length_8146_cov_7.30376, whole genome shotgun sequence

⇒Summary: seq-len = 8146 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 339-1087 bp Zoom in on locus 1 x13 CRISPR array Location: 339-1087 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 339-1087 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 339-1087 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RHSW01000039.1 Pseudomonas aeruginosa strain PA_059 NODE_39_length_54616_cov_6.70104, whole genome shotgun sequence

⇒Summary: seq-len = 54616 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37699-49457 bp Zoom in on locus 1 x17 x10 x8 CRISPR array Location: 37699-38689 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 37699-38689 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09718:cas1 Type: universal Location: 38949-39923 bp Gene: COG1203:cas3 Type: Type-I Location: 39920-43150 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 43208-44512 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 44499-45482 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 45493-46521 bp Gene: cd09739:cas6f Type: other Location: 46525-47088 bp CRISPR array Location: 47338-47906 bp Num of repeats: 10 Spacers: s17-s25 CRISPR array Location: 47338-47906 bp Num of repeats: 10 Spacers: s17-s25 CRISPR array Location: 49010-49457 bp Num of repeats: 8 Spacers: s26-s32 CRISPR array Location: 49010-49457 bp Num of repeats: 8 Spacers: s26-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37699-38689 bp]: array | spacers
           [Locus range 47338-47906 bp]: array | spacers
           [Locus range 49010-49457 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)