CRISPRone

CRISPRone report for GCA_003950015.1_ASM395001v1

♦ Seq 1: CP034354.1 Pseudomonas aeruginosa strain IMP-13 chromosome, complete genome

⇒Summary: seq-len = 7047704 bp; # of CRISPR array = 3; # of cas gene = 16  (type I, II, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 460709-462916 bp 2 Locus 2: 1413445-1428011 bp 3 Locus 3: 2259292-2266092 bp 4 Locus 4: 6196193-6208308 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 Zoom in on locus 4 x9 x8 x21 Gene: COG2378:WYL Type: other Location: 460709-461680 bp Gene: unk Type: unknown Location: 461789-462475 bp Gene: cd09693:cas5 Type: Type-I Location: 462509-462916 bp Gene: cd12217:csn2 Type: Subtype-II-A Location: 1413445-1415325 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 1415382-1418387 bp Gene: unk Type: unknown Location: 1418399-1420399 bp Gene: unk Type: unknown Location: 1420411-1421214 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 1421211-1424444 bp Gene: pfam13280:WYL Type: other Location: 1424457-1425365 bp Gene: unk Type: unknown Location: 1425645-1426535 bp Gene: unk Type: unknown Location: 1426670-1426987 bp Gene: mkCas0115:csx3 Type: other Location: 1426980-1428011 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 2259292-2262525 bp Gene: pfam13280:WYL Type: other Location: 2262538-2263446 bp Gene: unk Type: unknown Location: 2263726-2264616 bp Gene: mkCas0115:csx3 Type: other Location: 2265061-2266092 bp CRISPR array Location: 6196193-6196701 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 6196193-6196701 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 6197980-6198429 bp Num of repeats: 8 Spacers: s9-s15 CRISPR array Location: 6197980-6198429 bp Num of repeats: 8 Spacers: s9-s15 Gene: cd09739:cas6f Type: other Location: 6198678-6199241 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6199245-6200273 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6200284-6201267 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6201254-6202558 bp Gene: COG1203:cas3 Type: Type-I Location: 6202616-6205846 bp Gene: cd09718:cas1 Type: universal Location: 6205843-6206817 bp CRISPR array Location: 6207078-6208308 bp Num of repeats: 21 Spacers: s16-s35 CRISPR array Location: 6207078-6208308 bp Num of repeats: 21 Spacers: s16-s35 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 6196193-6196701 bp]: array | spacers
           [Locus range 6197980-6198429 bp]: array | spacers
           [Locus range 6207078-6208308 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CP034355.1 Pseudomonas aeruginosa strain IMP-13 plasmid pPYO_TB, complete sequence

⇒Summary: seq-len = 130306 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46562-52034 bp Zoom in on locus 1 Gene: cd09707:csf3gr5 Type: Subtype-IV-A Location: 46562-47212 bp Gene: cd09706:csf2gr7 Type: Subtype-IV-A Location: 47219-48262 bp Gene: cd09705:csf1gr8 Type: Subtype-IV-A Location: 48262-49017 bp Gene: mkCas0159:csf5gr6 Type: Subtype-IV-A Location: 49046-49771 bp Gene: cd09708:DinG Type: Subtype-IV-A Location: 49860-52034 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)