CRISPRone

CRISPRone report for GCA_003950235.1_ASM395023v1

♦ Seq 1: CP034368.1 Pseudomonas aeruginosa strain B41226 chromosome, complete genome

⇒Summary: seq-len = 6814295 bp; # of CRISPR array = 3; # of cas gene = 10  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3109420-3119729 bp 2 Locus 2: 4434793-4435240 bp 3 Locus 3: 5984133-5993994 bp Zoom in on locus 1 x13 x17 Zoom in on locus 2 x8 Zoom in on locus 3 CRISPR array Location: 3109420-3110168 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 3109420-3110168 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09718:cas1 Type: universal Location: 3110419-3111393 bp Gene: COG1203:cas3 Type: Type-I Location: 3111390-3114620 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3114678-3115982 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3115969-3116952 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 3116963-3117991 bp Gene: cd09739:cas6f Type: other Location: 3117995-3118558 bp CRISPR array Location: 3118742-3119729 bp Num of repeats: 17 Spacers: s13-s28 CRISPR array Location: 3118742-3119729 bp Num of repeats: 17 Spacers: s13-s28 CRISPR array Location: 4434793-4435240 bp Num of repeats: 8 Spacers: s29-s35 CRISPR array Location: 4434793-4435240 bp Num of repeats: 8 Spacers: s29-s35 Gene: COG1199:DinG Type: Subtype-IV-A Location: 5984133-5986499 bp Gene: unk Type: unknown Location: 5986892-5987470 bp Gene: unk Type: unknown Location: 5987614-5987769 bp Gene: pfam13280:WYL Type: other Location: 5988023-5988898 bp Gene: unk Type: unknown Location: 5988913-5989446 bp Gene: unk Type: unknown Location: 5989756-5989935 bp Gene: pfam13280:WYL Type: other Location: 5991207-5992223 bp Gene: mkCas0115:csx3 Type: other Location: 5992384-5993994 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3109420-3110168 bp]: array | spacers
           [Locus range 3118742-3119729 bp]: array | spacers
           [Locus range 4434793-4435240 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)