CRISPRone

CRISPRone report for GCA_003950255.1_ASM395025v1

♦ Seq 1: CP034369.1 Pseudomonas aeruginosa strain SP4371 chromosome, complete genome

⇒Summary: seq-len = 6937609 bp; # of CRISPR array = 3; # of cas gene = 10  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 837118-837566 bp 2 Locus 2: 2291568-2301877 bp 3 Locus 3: 5718873-5728734 bp Zoom in on locus 1 x8 Zoom in on locus 2 x17 x13 Zoom in on locus 3 CRISPR array Location: 837118-837566 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 837118-837566 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2291568-2292556 bp Num of repeats: 17 Spacers: s8-s23 CRISPR array Location: 2291568-2292556 bp Num of repeats: 17 Spacers: s8-s23 Gene: cd09739:cas6f Type: other Location: 2292739-2293302 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2293306-2294334 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2294345-2295328 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2295315-2296619 bp Gene: COG1203:cas3 Type: Type-I Location: 2296677-2299907 bp Gene: cd09718:cas1 Type: universal Location: 2299904-2300878 bp CRISPR array Location: 2301130-2301877 bp Num of repeats: 13 Spacers: s24-s35 CRISPR array Location: 2301130-2301877 bp Num of repeats: 13 Spacers: s24-s35 Gene: COG1199:DinG Type: Subtype-IV-A Location: 5718873-5721239 bp Gene: unk Type: unknown Location: 5721632-5722210 bp Gene: unk Type: unknown Location: 5722354-5722509 bp Gene: pfam13280:WYL Type: other Location: 5722763-5723638 bp Gene: unk Type: unknown Location: 5723653-5724186 bp Gene: unk Type: unknown Location: 5724496-5724675 bp Gene: pfam13280:WYL Type: other Location: 5725947-5726963 bp Gene: mkCas0115:csx3 Type: other Location: 5727124-5728734 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 837118-837566 bp]: array | spacers
           [Locus range 2291568-2292556 bp]: array | spacers
           [Locus range 2301130-2301877 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)