CRISPRone

CRISPRone report for GCA_003952285.1_ASM395228v1

♦ Seq 1: CP034434.1 Pseudomonas aeruginosa strain SP2230 chromosome, complete genome

⇒Summary: seq-len = 6976603 bp; # of CRISPR array = 3; # of cas gene = 10  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 651774-652222 bp 2 Locus 2: 1966006-1976915 bp 3 Locus 3: 5487352-5497213 bp Zoom in on locus 1 x8 Zoom in on locus 2 x17 x23 Zoom in on locus 3 CRISPR array Location: 651774-652222 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 651774-652222 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 1966006-1966994 bp Num of repeats: 17 Spacers: s8-s23 CRISPR array Location: 1966006-1966994 bp Num of repeats: 17 Spacers: s8-s23 Gene: cd09739:cas6f Type: other Location: 1967177-1967740 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1967744-1968772 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1968783-1969766 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 1969753-1971057 bp Gene: COG1203:cas3 Type: Type-I Location: 1971115-1974345 bp Gene: cd09718:cas1 Type: universal Location: 1974342-1975316 bp CRISPR array Location: 1975568-1976915 bp Num of repeats: 23 Spacers: s24-s45 CRISPR array Location: 1975568-1976915 bp Num of repeats: 23 Spacers: s24-s45 Gene: COG1199:DinG Type: Subtype-IV-A Location: 5487352-5489718 bp Gene: unk Type: unknown Location: 5490111-5490689 bp Gene: unk Type: unknown Location: 5490833-5490988 bp Gene: pfam13280:WYL Type: other Location: 5491242-5492117 bp Gene: unk Type: unknown Location: 5492132-5492665 bp Gene: unk Type: unknown Location: 5492975-5493154 bp Gene: pfam13280:WYL Type: other Location: 5494426-5495442 bp Gene: mkCas0115:csx3 Type: other Location: 5495603-5497213 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 651774-652222 bp]: array | spacers
           [Locus range 1966006-1966994 bp]: array | spacers
           [Locus range 1975568-1976915 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)