CRISPRone

CRISPRone report for GCA_003952305.1_ASM395230v1

♦ Seq 1: CP034435.1 Pseudomonas aeruginosa strain B14130 chromosome, complete genome

⇒Summary: seq-len = 6759594 bp; # of CRISPR array = 3; # of cas gene = 10  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 68792-78653 bp 2 Locus 2: 3515866-3526175 bp 3 Locus 3: 4884630-4885077 bp Zoom in on locus 1 Zoom in on locus 2 x13 x17 Zoom in on locus 3 x8 Gene: mkCas0115:csx3 Type: other Location: 68792-70402 bp Gene: pfam13280:WYL Type: other Location: 70563-71579 bp Gene: unk Type: unknown Location: 72851-73030 bp Gene: unk Type: unknown Location: 73340-73873 bp Gene: pfam13280:WYL Type: other Location: 73888-74763 bp Gene: unk Type: unknown Location: 74894-75181 bp Gene: unk Type: unknown Location: 75316-75894 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 76287-78653 bp CRISPR array Location: 3515866-3516614 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 3515866-3516614 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09718:cas1 Type: universal Location: 3516865-3517839 bp Gene: COG1203:cas3 Type: Type-I Location: 3517836-3521066 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3521124-3522428 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3522415-3523398 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 3523409-3524437 bp Gene: cd09739:cas6f Type: other Location: 3524441-3525004 bp CRISPR array Location: 3525188-3526175 bp Num of repeats: 17 Spacers: s13-s28 CRISPR array Location: 3525188-3526175 bp Num of repeats: 17 Spacers: s13-s28 CRISPR array Location: 4884630-4885077 bp Num of repeats: 8 Spacers: s29-s35 CRISPR array Location: 4884630-4885077 bp Num of repeats: 8 Spacers: s29-s35 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3515866-3516614 bp]: array | spacers
           [Locus range 3525188-3526175 bp]: array | spacers
           [Locus range 4884630-4885077 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)