CRISPRone

CRISPRone report for GCA_003954285.1_ASM395428v1

♦ Seq 1: RWWL01000131.1 Pseudomonas aeruginosa strain R4671 GCID_CRPK_0010_NODE_44.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 48755 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11810-18995 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 11810-12682 bp Gene: pfam13280:WYL Type: other Location: 12917-13963 bp Gene: pfam13280:WYL Type: other Location: 17937-18995 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWWL01000005.1 Pseudomonas aeruginosa strain R4671 GCID_CRPK_0010_NODE_24.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 75878 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36377-47423 bp Zoom in on locus 1 x22 x19 CRISPR array Location: 36377-37667 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 36377-37667 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09739:cas6f Type: other Location: 37916-38479 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38483-39511 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39522-40505 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40492-41796 bp Gene: COG1203:cas3 Type: Type-I Location: 41854-45084 bp Gene: cd09718:cas1 Type: universal Location: 45081-46055 bp CRISPR array Location: 46316-47423 bp Num of repeats: 19 Spacers: s22-s39 CRISPR array Location: 46316-47423 bp Num of repeats: 19 Spacers: s22-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36377-37667 bp]: array | spacers
           [Locus range 46316-47423 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWWL01000120.1 Pseudomonas aeruginosa strain R4671 GCID_CRPK_0010_NODE_27.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 67108 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10035-20240 bp Zoom in on locus 1 x5 x12 CRISPR array Location: 10035-10308 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 10035-10308 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09641:cas3HD Type: Type-I Location: 11081-13762 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 13765-15333 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 15330-15860 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 15870-17012 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 17014-17676 bp Gene: pfam08798:cas6e Type: other Location: 17651-18262 bp Gene: cd09719:cas1 Type: universal Location: 18289-19179 bp Gene: pfam09707:cas2 Type: universal Location: 19176-19475 bp CRISPR array Location: 19540-20240 bp Num of repeats: 12 Spacers: s5-s15 CRISPR array Location: 19540-20240 bp Num of repeats: 12 Spacers: s5-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 10035-10308 bp]: array | spacers
           [Locus range 19540-20240 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)