CRISPRone

CRISPRone report for GCA_003954355.1_ASM395435v1

♦ Seq 1: RWWM01000088.1 Pseudomonas aeruginosa strain U3484 GCID_CRPK_0011_NODE_75.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 24865 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1698-12212 bp Zoom in on locus 1 x10 x12 CRISPR array Location: 1698-2276 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1698-2276 bp Num of repeats: 10 Spacers: s1-s9 Gene: pfam09707:cas2 Type: universal Location: 2341-2640 bp Gene: cd09719:cas1 Type: universal Location: 2637-3527 bp Gene: pfam08798:cas6e Type: other Location: 3554-4093 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 4140-4802 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 4804-5946 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 5956-6486 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 6483-8051 bp Gene: cd09641:cas3HD Type: Type-I Location: 8054-10735 bp CRISPR array Location: 11511-12212 bp Num of repeats: 12 Spacers: s10-s20 CRISPR array Location: 11511-12212 bp Num of repeats: 12 Spacers: s10-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1698-2276 bp]: array | spacers
           [Locus range 11511-12212 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)