CRISPRone

CRISPRone report for GCA_003954555.1_ASM395455v1

♦ Seq 1: RWWK01000177.1 Pseudomonas aeruginosa strain R4730 GCID_CRPK_0009_NODE_21.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 91650 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90863-91310 bp Zoom in on locus 1 x8 CRISPR array Location: 90863-91310 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 90863-91310 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90863-91310 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWWK01000063.1 Pseudomonas aeruginosa strain R4730 GCID_CRPK_0009_NODE_48.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 56421 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4341-14202 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 4341-5951 bp Gene: pfam13280:WYL Type: other Location: 6112-7128 bp Gene: unk Type: unknown Location: 8092-8331 bp Gene: unk Type: unknown Location: 8400-8579 bp Gene: unk Type: unknown Location: 8889-9422 bp Gene: pfam13280:WYL Type: other Location: 9437-10312 bp Gene: unk Type: unknown Location: 10362-10730 bp Gene: unk Type: unknown Location: 10796-11443 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 11836-14202 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWWK01000072.1 Pseudomonas aeruginosa strain R4730 GCID_CRPK_0009_NODE_55.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 48470 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37221-48130 bp Zoom in on locus 1 x17 x23 CRISPR array Location: 37221-38209 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 37221-38209 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09739:cas6f Type: other Location: 38392-38955 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38959-39987 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39998-40981 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40968-42272 bp Gene: COG1203:cas3 Type: Type-I Location: 42330-45560 bp Gene: cd09718:cas1 Type: universal Location: 45557-46531 bp CRISPR array Location: 46783-48130 bp Num of repeats: 23 Spacers: s17-s38 CRISPR array Location: 46783-48130 bp Num of repeats: 23 Spacers: s17-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37221-38209 bp]: array | spacers
           [Locus range 46783-48130 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)