CRISPRone

CRISPRone report for GCA_003954725.1_ASM395472v1

♦ Seq 1: RWWU01000186.1 Pseudomonas aeruginosa strain R486 GCID_CRPK_0019_NODE_39.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 66987 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36374-47653 bp Zoom in on locus 1 x12 x34 CRISPR array Location: 36374-37062 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 36374-37062 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 37245-37808 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 37812-38840 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 38851-39834 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 39821-41125 bp Gene: COG1203:cas3 Type: Type-I Location: 41183-44413 bp Gene: cd09718:cas1 Type: universal Location: 44410-45384 bp CRISPR array Location: 45646-47653 bp Num of repeats: 34 Spacers: s12-s44 CRISPR array Location: 45646-47653 bp Num of repeats: 34 Spacers: s12-s44 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36374-37062 bp]: array | spacers
           [Locus range 45646-47653 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWWU01000174.1 Pseudomonas aeruginosa strain R486 GCID_CRPK_0019_NODE_1.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 358426 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73669-80457 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 73669-74700 bp Gene: unk Type: unknown Location: 75145-76035 bp Gene: pfam13280:WYL Type: other Location: 76315-77223 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 77236-80457 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWWU01000058.1 Pseudomonas aeruginosa strain R486 GCID_CRPK_0019_NODE_8.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 169823 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38695-48150 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 38695-39771 bp Gene: unk Type: unknown Location: 40582-40863 bp Gene: unk Type: unknown Location: 40916-41134 bp Gene: unk Type: unknown Location: 41540-42121 bp Gene: pfam13280:WYL Type: other Location: 42135-43010 bp Gene: unk Type: unknown Location: 43140-44720 bp Gene: unk Type: unknown Location: 44744-45391 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 45784-48150 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)