CRISPRone

CRISPRone report for GCA_003954985.1_ASM395498v1

♦ Seq 1: RWXB01000104.1 Pseudomonas aeruginosa strain R3207 GCID_CRPK_0026_NODE_81.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 20374 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4041-17131 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 4041-4343 bp Gene: cd09641:cas3HD Type: Type-I Location: 14025-15884 bp Gene: unk Type: unknown Location: 16057-16290 bp Gene: unk Type: unknown Location: 16405-16779 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 16826-17131 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWXB01000094.1 Pseudomonas aeruginosa strain R3207 GCID_CRPK_0026_NODE_19.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 104862 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 57863-68307 bp Zoom in on locus 1 x19 x12 CRISPR array Location: 57863-58971 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 57863-58971 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09718:cas1 Type: universal Location: 59231-60205 bp Gene: COG1203:cas3 Type: Type-I Location: 60202-63432 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 63490-64794 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 64781-65764 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 65775-66803 bp Gene: cd09739:cas6f Type: other Location: 66807-67370 bp CRISPR array Location: 67620-68307 bp Num of repeats: 12 Spacers: s19-s29 CRISPR array Location: 67620-68307 bp Num of repeats: 12 Spacers: s19-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 57863-58971 bp]: array | spacers
           [Locus range 67620-68307 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)