CRISPRone

CRISPRone report for GCA_003955015.1_ASM395501v1

♦ Seq 1: RWWQ01000046.1 Pseudomonas aeruginosa strain R4164 GCID_CRPK_0015_NODE_13.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 129099 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 83-1251 bp Zoom in on locus 1 x20 CRISPR array Location: 83-1251 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 83-1251 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 83-1251 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWWQ01000073.1 Pseudomonas aeruginosa strain R4164 GCID_CRPK_0015_NODE_47.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 48019 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38235-47937 bp Zoom in on locus 1 x14 x2 x3 CRISPR array Location: 38235-39043 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 38235-39043 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 39226-39789 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39793-40821 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40832-41815 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41802-43106 bp Gene: COG1203:cas3 Type: Type-I Location: 43164-46394 bp Gene: cd09718:cas1 Type: universal Location: 46391-47365 bp CRISPR array Location: 47630-47717 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 47630-47717 bp Num of repeats: 2 Spacers: s14-s14 CRISPR array Location: 47790-47937 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 47790-47937 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38235-39043 bp]: array | spacers
           [Locus range 47630-47717 bp]: array | spacers
           [Locus range 47790-47937 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)