CRISPRone

CRISPRone report for GCA_003955025.1_ASM395502v1

♦ Seq 1: RWXM01000065.1 Pseudomonas aeruginosa strain R4656 GCID_CRPK_0001_NODE_30.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 85059 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 71685-82270 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 71685-72554 bp Gene: pfam00078:RT Type: other Location: 77463-78731 bp Gene: unk Type: unknown Location: 78881-79279 bp Gene: unk Type: unknown Location: 79463-79642 bp Gene: cls000170:cas4 Type: Type-I Location: 80726-82270 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWXM01000077.1 Pseudomonas aeruginosa strain R4656 GCID_CRPK_0001_NODE_77.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 26640 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1674-14017 bp Zoom in on locus 1 x36 x16 CRISPR array Location: 1674-3839 bp Num of repeats: 36 Spacers: s1-s35 CRISPR array Location: 1674-3839 bp Num of repeats: 36 Spacers: s1-s35 Gene: pfam09707:cas2 Type: universal Location: 3904-4203 bp Gene: cd09719:cas1 Type: universal Location: 4200-5090 bp Gene: pfam08798:cas6e Type: other Location: 5117-5656 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 5703-6365 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 6367-7509 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 7519-8049 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 8046-9614 bp Gene: cd09641:cas3HD Type: Type-I Location: 9617-12298 bp CRISPR array Location: 13073-14017 bp Num of repeats: 16 Spacers: s36-s50 CRISPR array Location: 13073-14017 bp Num of repeats: 16 Spacers: s36-s50 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1674-3839 bp]: array | spacers
           [Locus range 13073-14017 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)