CRISPRone

CRISPRone report for GCA_003955185.1_ASM395518v1

♦ Seq 1: RWWY01000011.1 Pseudomonas aeruginosa strain R4261 GCID_CRPK_0023_NODE_43.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 48523 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38071-48392 bp Zoom in on locus 1 x15 x15 CRISPR array Location: 38071-38939 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 38071-38939 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 39121-39684 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39688-40716 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40727-41710 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41697-43001 bp Gene: COG1203:cas3 Type: Type-I Location: 43059-46289 bp Gene: cd09718:cas1 Type: universal Location: 46286-47260 bp CRISPR array Location: 47525-48392 bp Num of repeats: 15 Spacers: s15-s28 CRISPR array Location: 47525-48392 bp Num of repeats: 15 Spacers: s15-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38071-38939 bp]: array | spacers
           [Locus range 47525-48392 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWWY01000095.1 Pseudomonas aeruginosa strain R4261 GCID_CRPK_0023_NODE_88.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 1642 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132-1180 bp Zoom in on locus 1 x18 CRISPR array Location: 132-1180 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 132-1180 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 132-1180 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)