CRISPRone

CRISPRone report for GCA_003955265.1_ASM395526v1

♦ Seq 1: RWWV01000167.1 Pseudomonas aeruginosa strain B1486 GCID_CRPK_0020_NODE_85.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 26615 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1662-14005 bp Zoom in on locus 1 x36 x16 CRISPR array Location: 1662-3827 bp Num of repeats: 36 Spacers: s1-s35 CRISPR array Location: 1662-3827 bp Num of repeats: 36 Spacers: s1-s35 Gene: pfam09707:cas2 Type: universal Location: 3892-4191 bp Gene: cd09719:cas1 Type: universal Location: 4188-5078 bp Gene: pfam08798:cas6e Type: other Location: 5105-5644 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 5691-6353 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 6355-7497 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 7507-8037 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 8034-9602 bp Gene: cd09641:cas3HD Type: Type-I Location: 9605-12286 bp CRISPR array Location: 13061-14005 bp Num of repeats: 16 Spacers: s36-s50 CRISPR array Location: 13061-14005 bp Num of repeats: 16 Spacers: s36-s50 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1662-3827 bp]: array | spacers
           [Locus range 13061-14005 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)