CRISPRone

CRISPRone report for GCA_003955325.1_ASM395532v1

♦ Seq 1: RWXA01000068.1 Pseudomonas aeruginosa strain B13455 GCID_CRPK_0025_NODE_21.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 139024 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125647-136232 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 125647-126516 bp Gene: pfam00078:RT Type: other Location: 131425-132693 bp Gene: unk Type: unknown Location: 132843-133241 bp Gene: unk Type: unknown Location: 133425-133604 bp Gene: cls000170:cas4 Type: Type-I Location: 134688-136232 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWXA01000086.1 Pseudomonas aeruginosa strain B13455 GCID_CRPK_0025_NODE_64.ctg_1, whole genome shotgun sequence

⇒Summary: seq-len = 24818 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12624-23136 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 12624-13142 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 12624-13142 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09641:cas3HD Type: Type-I Location: 13915-16596 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 16599-18167 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 18164-18694 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 18704-19846 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 19848-20510 bp Gene: pfam08798:cas6e Type: other Location: 20485-21096 bp Gene: cd09719:cas1 Type: universal Location: 21123-22013 bp Gene: pfam09707:cas2 Type: universal Location: 22010-22309 bp CRISPR array Location: 22374-23136 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 22374-23136 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12624-13142 bp]: array | spacers
           [Locus range 22374-23136 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)