CRISPRone

CRISPRone report for GCA_003967495.1_ASM396749v1

♦ Seq 1: BIFO01000140.1 Pseudomonas aeruginosa TUM17826 DNA, sequence140, whole genome shotgun sequence

⇒Summary: seq-len = 2019 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89-1677 bp Zoom in on locus 1 x27 CRISPR array Location: 89-1677 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 89-1677 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 89-1677 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIFO01000022.1 Pseudomonas aeruginosa TUM17826 DNA, sequence022, whole genome shotgun sequence

⇒Summary: seq-len = 95721 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32818-41079 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 32818-35184 bp Gene: unk Type: unknown Location: 35577-36224 bp Gene: unk Type: unknown Location: 36290-36658 bp Gene: COG2378:WYL Type: other Location: 36708-37550 bp Gene: pfam13280:WYL Type: other Location: 38292-39308 bp Gene: mkCas0115:csx3 Type: other Location: 39469-41079 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIFO01000005.1 Pseudomonas aeruginosa TUM17826 DNA, sequence005, whole genome shotgun sequence

⇒Summary: seq-len = 207698 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59215-60142 bp Zoom in on locus 1 x16 CRISPR array Location: 59215-60142 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 59215-60142 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59215-60142 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIFO01000053.1 Pseudomonas aeruginosa TUM17826 DNA, sequence053, whole genome shotgun sequence

⇒Summary: seq-len = 48047 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192-9800 bp Zoom in on locus 1 x22 Gene: cd09718:cas1 Type: universal Location: 192-1166 bp Gene: COG1203:cas3 Type: Type-I Location: 1163-4393 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4451-5755 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5742-6725 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6736-7764 bp Gene: cd09739:cas6f Type: other Location: 7768-8331 bp CRISPR array Location: 8516-9800 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 8516-9800 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8516-9800 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)