CRISPRone

CRISPRone report for GCA_003968055.1_ASM396805v1

♦ Seq 1: RXTC01000034.1 Pseudomonas aeruginosa strain MRSN8912 MRSN8912_contig00034, whole genome shotgun sequence

⇒Summary: seq-len = 105741 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13050-25793 bp Zoom in on locus 1 Gene: cd06127:DEDDh Type: Type-I Location: 13050-13595 bp Gene: unk Type: unknown Location: 13674-14585 bp Gene: unk Type: unknown Location: 21059-21523 bp Gene: mkCas0071:csa5gr11 Type: Subtype-I-A Location: 21648-23633 bp Gene: unk Type: unknown Location: 23676-24725 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 24876-25793 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXTC01000006.1 Pseudomonas aeruginosa strain MRSN8912 MRSN8912_contig00006, whole genome shotgun sequence

⇒Summary: seq-len = 608363 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 323349-334044 bp Zoom in on locus 1 x12 x13 CRISPR array Location: 323349-324049 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 323349-324049 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 324823-327504 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 327507-329075 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 329072-329602 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 329612-330754 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 330756-331418 bp Gene: pfam08798:cas6e Type: other Location: 331393-332004 bp Gene: COG1518:cas1 Type: universal Location: 332031-332465 bp Gene: COG1518:cas1 Type: universal Location: 332472-332921 bp Gene: pfam09707:cas2 Type: universal Location: 332918-333217 bp CRISPR array Location: 333282-334044 bp Num of repeats: 13 Spacers: s12-s23 CRISPR array Location: 333282-334044 bp Num of repeats: 13 Spacers: s12-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 323349-324049 bp]: array | spacers
           [Locus range 333282-334044 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RXTC01000046.1 Pseudomonas aeruginosa strain MRSN8912 MRSN8912_contig00046, whole genome shotgun sequence

⇒Summary: seq-len = 58824 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40188-53278 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 40188-40493 bp Gene: unk Type: unknown Location: 41029-41262 bp Gene: cd09641:cas3HD Type: Type-I Location: 41435-43294 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 52976-53278 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)