CRISPRone

CRISPRone report for GCA_003968325.1_ASM396832v1

♦ Seq 1: RXTU01000046.1 Pseudomonas aeruginosa strain MRSN443463 MRSN443463_contig00046, whole genome shotgun sequence

⇒Summary: seq-len = 274631 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 266407-267636 bp Zoom in on locus 1 x21 CRISPR array Location: 266407-267636 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 266407-267636 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 266407-267636 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXTU01000086.1 Pseudomonas aeruginosa strain MRSN443463 MRSN443463_contig00086, whole genome shotgun sequence

⇒Summary: seq-len = 48754 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37605-47924 bp Zoom in on locus 1 x16 x14 CRISPR array Location: 37605-38534 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 37605-38534 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09739:cas6f Type: other Location: 38717-39280 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39284-40312 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40323-41306 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41293-42597 bp Gene: COG1203:cas3 Type: Type-I Location: 42655-45885 bp Gene: cd09718:cas1 Type: universal Location: 45882-46856 bp CRISPR array Location: 47117-47924 bp Num of repeats: 14 Spacers: s16-s28 CRISPR array Location: 47117-47924 bp Num of repeats: 14 Spacers: s16-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37605-38534 bp]: array | spacers
           [Locus range 47117-47924 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)