CRISPRone

CRISPRone report for GCA_003968375.1_ASM396837v1

♦ Seq 1: RXUI01000018.1 Pseudomonas aeruginosa strain MRSN315 MRSN315_contig00018, whole genome shotgun sequence

⇒Summary: seq-len = 304346 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 255174-266214 bp Zoom in on locus 1 x24 x18 CRISPR array Location: 255174-256583 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 255174-256583 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09718:cas1 Type: universal Location: 256843-257817 bp Gene: COG1203:cas3 Type: Type-I Location: 257814-261044 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 261102-262406 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 262393-263376 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 263387-264415 bp Gene: cd09739:cas6f Type: other Location: 264419-264982 bp CRISPR array Location: 265167-266214 bp Num of repeats: 18 Spacers: s24-s40 CRISPR array Location: 265167-266214 bp Num of repeats: 18 Spacers: s24-s40 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 255174-256583 bp]: array | spacers
           [Locus range 265167-266214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RXUI01000006.1 Pseudomonas aeruginosa strain MRSN315 MRSN315_contig00006, whole genome shotgun sequence

⇒Summary: seq-len = 673704 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207835-208463 bp Zoom in on locus 1 x11 CRISPR array Location: 207835-208463 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 207835-208463 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 207835-208463 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)